New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3944230	36 (0.740)	3 (0.070)	3/246	NT	7.8%	coding (166/507 nt)	PP_5605	hypothetical protein
	?	NC_002947	= 3944282	37 (0.810)					coding (114/507 nt)	PP_5605	hypothetical protein

ATGAACTGGAAAGGCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3944076‑3944230 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggTAAACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCCGCGAAAGGGCCGGAACAGGCCTCCCGCGACCTGTTCCCAACCCAGCAATGGACCCAACCCAAAACCCTGGCCACGGTCACCGAAC  <  NC_002947/3944282‑3944143                                                                                                                                                                                                                                                                                                         ATGAACTGGAAAGGCAGTTCCGGGGCCGTAGGGGACGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCTGTGACCGTGGCCAGGGTATTGGGTTGGGTCCATTGGTGGGTTGGTAACAGGTCGAGGGAGTCCTGTTCCTGCCCTT                                                                                                                                                     >  8:112560/1‑148   GAACTGGAAAGGCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCG                                                                                                                                                  >  2:308711/1‑149    AACTGGAAAGGCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGC                                                                                                                                                 >  2:250612/1‑149    AACTGGAAAGGCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCG                                                                                                                                                  <  7:142448/148‑1    AACTGGAAAGGCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTGGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCG                                                                                                                                                  <  1:212923/148‑1                                                           TCACGGGTTGTACGGTGACCGT‑GCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGC                                                                                         <  3:43187/149‑1                                                                        GGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCCGCGAAAGGGC                                                                             <  6:25444/149‑1                                                                         GTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCCGCGAAAGGGCC                                                                            <  4:123789/149‑1                                                                                                                                                    TTCGCGGGTAGACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCCGCGAAAGGGCCGGAACAGGCCTCCCGCGACCTGTTCCCAACCCAGCAATGGACCCAACCCAAACCCCTGGCCACGGTCACCGAAC  >  5:146384/1‑148                                                                                                                                                    TTCGCGGGTAAACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCCGCGAAAGGGCCGGAACAGGCCTCCCGCGACCTGTTCCCAACCCAGCAATGGACCCAACCCAAAA                       <  3:134036/127‑1                                                                                                                                                    TTCGCGGGTAAACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCCGCGAAAGGGCCGGAACAGGCCTCCCGCGACCTGTTCCCAACCCAGCAATGGACCCAACCCAAAA                       >  4:134036/1‑127                                                                                                                                                    TTCGCGGGTAAACCAGCTCATACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCAGCGAAAGGCCCGGAACAGGCCTCCCCCGACCTGTTCCCAAACCAGCAATGGACCCAACACAAAAACCTGGCCACGGTCACCGAAC  >  6:77331/1‑148                                                                                                                                                                                                                                                                                                         ATGAACTGGAAAGGCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3944076‑3944230 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggTAAACCCGCTCCTACAACAGAAAGCGCTGCGTCCATTGTAGGCGCGAGCTTGCCCGCGAAAGGGCCGGAACAGGCCTCCCGCGACCTGTTCCCAACCCAGCAATGGACCCAACCCAAAACCCTGGCCACGGTCACCGAAC  <  NC_002947/3944282‑3944143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.