New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3944230	36 (0.740)	3 (0.070)	3/246	NT	7.8%	coding (166/507 nt)	PP_5605	hypothetical protein
	?	NC_002947	= 3944282	37 (0.810)					coding (114/507 nt)	PP_5605	hypothetical protein

TCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAGGGTCATGCGCAGG  >  NC_002947/3944134‑3944428                                                                                                                                                     |                                                                                                                                                   tcaCGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTAGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTa                                                                                                                                                    >  5:77331/1‑149 (MQ=255)          gttCGGTGACCGTGGCCAGGTTTTTGTGTTGGGTCCATTGCTGGTTTGGGAACAGGTCGGGGGAGGCCTGTTCCGGGCCTTTCGCTGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTATGAGCTGGTTTAcccgcgaa                                                                                                                                            >  6:77331‑M2/1‑140 (MQ=255)          gttCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAg                                                                                                                                           >  7:254208/1‑149 (MQ=255)          gttCGGTGACCGTGGCCAGGGGTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTCTAcccgcgaa                                                                                                                                            >  5:146384‑M2/1‑140 (MQ=255)              ggTGACGGTGGCCTGGGTTTTGGGTGGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGAAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCcg                                                                                                                                       <  8:254208/149‑1 (MQ=255)                 gACCGTGGCCAGGGGTTTGGGTGGGGGCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGa                                                                                                                                    <  5:238722/149‑1 (MQ=255)                         ccAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGAc                                                                                                                                   <  5:84477/142‑1 (MQ=255)                         ccAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGAc                                                                                                                                   >  6:84477/1‑142 (MQ=255)                          cAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGt                                                                                                                           >  4:95980/1‑149 (MQ=255)                          cAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGt                                                                                                                           >  6:265349/1‑149 (MQ=255)                               ttttGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaa                                                                                                                                            <  3:134036‑M2/127‑9 (MQ=255)                               ttttGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaa                                                                                                                                            >  4:134036‑M2/1‑119 (MQ=255)                               ttttGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTgg                                                                                                                      >  8:254743/1‑149 (MQ=255)                                 ttgggttgggTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGc                                                                                                                     <  5:250178/148‑1 (MQ=255)                                     gttgggtCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAAc                                                                                                                <  6:309282/149‑1 (MQ=255)                                     gttgggtCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAAc                                                                                                                >  5:309282/1‑149 (MQ=255)                                                       ttGGGAACAGGTCGCGGGAGGCGTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGGGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAg                                                                                              <  7:143384/149‑1 (MQ=255)                                                           gAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGc                                                                                            >  5:115204/1‑147 (MQ=255)                                                            aaCAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAg                                                                                         <  3:95980/149‑1 (MQ=255)                                                                  tCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGcgccgc                                                                                   <  1:27929/149‑1 (MQ=255)                                                                                ttCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAgg                                                                      <  1:15543/148‑1 (MQ=255)                                                                                    ggCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaaccctggccacggtcac                                                                 <  4:123789‑M2/149‑84 (MQ=255)                                                                                     gCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaaccctggccacggtcacc                                                                <  6:25444‑M2/149‑85 (MQ=255)                                                                                        cTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGcc                                                             <  8:148695/149‑1 (MQ=255)                                                                                         tttCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGcc                                                             >  2:1891/1‑148 (MQ=255)                                                                                             gcgGGCACGCGCGCGCCTACAAGGGACGCCGCGCTTTCTGTTGTCGGCGCGGGTTACCCCGCGAAGGCCGCGACGCCATCGGCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGAt                                                        <  1:308711/149‑1 (MQ=255)                                                                                             gcgGGCAAGCTCGCGCCTACAATGGACGGAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGAt                                                        >  1:171777/1‑149 (MQ=255)                                                                                             gcgGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGAt                                                        <  8:5669/149‑1 (MQ=255)                                                                                                 gCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaaccctggcacggtcaccgtacaacccgtga                                                    <  3:43187‑M2/149‑97 (MQ=255)                                                                                                     gCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCAc                                                >  7:48046/1‑149 (MQ=255)                                                                                                               aCAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTgtgtgt                                       >  5:66353/1‑148 (MQ=255)                                                                                                               aCAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGtt                                      >  5:70762/1‑149 (MQ=255)                                                                                                                       cGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGa                              <  8:157965/149‑1 (MQ=255)                                                                                                                        gCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGAc                             >  6:296760/1‑149 (MQ=255)                                                                                                                            cgcTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTc                          >  5:24345/1‑148 (MQ=255)                                                                                                                              cTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAgg                                                                      >  3:42609/1‑102 (MQ=255)                                                                                                                              cTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAgg                                                                      <  4:42609/102‑1 (MQ=255)                                                                                                                                ttCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAg                                                          <  4:217373/112‑1 (MQ=255)                                                                                                                                ttCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAg                                                          >  3:217373/1‑112 (MQ=255)                                                                                                                                     ttgtAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATa                  >  2:66867/1‑147 (MQ=255)                                                                                                                                       gtAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGa                    <  2:63467/143‑1 (MQ=255)                                                                                                                                       gtAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGa                    >  1:63467/1‑143 (MQ=255)                                                                                                                                       gtAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAg               <  6:70762/148‑1 (MQ=255)                                                                                                                                       gtAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAg               <  6:66353/148‑1 (MQ=255)                                                                                                                                        tAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAgg              <  6:24345/148‑1 (MQ=255)                                                                                                                                          ggAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAGGGt            >  2:216936/1‑148 (MQ=255)                                                                                                                                           gAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAGGGTCa          >  5:154978/1‑149 (MQ=255)                                                                                                                                                   ttACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAGGGTCATGCGCAgg  >  7:280317/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACTGCACGTTGTGTGTTCATCACGACCTCGACAGATAAAGGGTCATGCGCAGG  >  NC_002947/3944134‑3944428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.