New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3944230	36 (0.740)	3 (0.070)	3/246	NT	7.8%	coding (166/507 nt)	PP_5605	hypothetical protein
	?	NC_002947	= 3944282	37 (0.810)					coding (114/507 nt)	PP_5605	hypothetical protein

GCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACT  >  NC_002947/3944089‑3944378                                                                                                                                              |                                                                                                                                                     gCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTc                                                                                                                                               <  5:61129/149‑1 (MQ=255)   aGTGCCGGGGCCGGCGTGGCCGCGGCGACGACATGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGGTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTcgc                                                                                                                                             <  4:175062/149‑1 (MQ=255)           ggCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACaa                                                                                                                                     <  1:250612/149‑1 (MQ=255)              cGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATg                                                                                                                                   >  6:250178/1‑148 (MQ=255)                tCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTGTCGCGGGCAAGCTCGCGCCTCCCATGGAc                                                                                                                                >  8:112247/1‑149 (MQ=255)                            cgacgaCAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCt                                                                                                                    >  2:40982/1‑149 (MQ=255)                             gacgacAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCtg                                                                                                                   >  1:89179/1‑149 (MQ=255)                                   atgTGCGGTCATCAGGTGTTGTTCGGTGACCGTGGCCAGGGTTTTGTGTTGGGTCCATTGCTTGGTTGGGAACAGGTCGCGTGAGGCCTGTTCCGGCCCTTTCGAGTGCAAGCTCTCGCCTACAATGGACGCAGCGCTTTCTGTTGTAg                                                                                                             <  7:112560/147‑1 (MQ=255)                                   aGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAg                                                                                                             <  2:89179/149‑1 (MQ=255)                                   aGGTGCGGTCATCACGGGGTGTTCGGTGCCCGGGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAg                                                                                                             <  7:112247/149‑1 (MQ=255)                                     gTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAg                                                                                                             >  2:15543/1‑147 (MQ=255)                                             atcaCGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGttt                                                                                                   <  1:40982/149‑1 (MQ=255)                                             atcaCGGGTTGTTCGGGGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGttt                                                                                                   <  7:178893/149‑1 (MQ=255)                                              tcaCGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAg                                                                                                                            >  6:121184/1‑123 (MQ=255)                                              tcaCGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAg                                                                                                                            <  5:121184/123‑1 (MQ=255)                                              tcaCGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTAGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTa                                                                                                  >  5:77331/1‑149 (MQ=255)                                              tcaCGGGTTGTACGGTGACCGT‑GCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGtaaacccgctcctacaacagaaagcgctgcgtccattgtaggcgcgagcttgc                                                                                                 <  3:43187‑M1/149‑54 (MQ=255)                                                    gttgttCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCgg                                                                                                       <  6:166372/138‑1 (MQ=255)                                                    gttgttCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCgg                                                                                                       >  5:166372/1‑138 (MQ=255)                                                       gttCGGTGACCGTGGCCAGGTTTTTGTGTTGGGTCCATTGCTGGTTTGGGAACAGGTCGGGGGAGGCCTGTTCCGGGCCTTTCGCTGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTATGAGCTGGTTTAcccgcgaa                                                                                          >  6:77331‑M2/1‑140 (MQ=255)                                                       gttCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAg                                                                                         >  7:254208/1‑149 (MQ=255)                                                       gttCGGTGACCGTGGCCAGGGGTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTCTAcccgcgaa                                                                                          >  5:146384‑M2/1‑140 (MQ=255)                                                           ggTGACGGTGGCCTGGGTTTTGGGTGGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGAAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCcg                                                                                     <  8:254208/149‑1 (MQ=255)                                                           ggTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGtaaacccgctcctacaacagaaagcgctgcgtccattgtaggcgcgagcttgcccgcgaaagggc                                                                                     <  6:25444‑M1/149‑66 (MQ=255)                                                            gTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGtaaacccgctcctacaacagaaagcgctgcgtccattgtaggcgcgagcttgcccgcgaaagggcc                                                                                    <  4:123789‑M1/149‑67 (MQ=255)                                                              gACCGTGGCCAGGGGTTTGGGTGGGGGCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGa                                                                                  <  5:238722/149‑1 (MQ=255)                                                                      ccAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGAc                                                                                 >  6:84477/1‑142 (MQ=255)                                                                      ccAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGAc                                                                                 <  5:84477/142‑1 (MQ=255)                                                                       cAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGt                                                                         >  4:95980/1‑149 (MQ=255)                                                                       cAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGt                                                                         >  6:265349/1‑149 (MQ=255)                                                                            ttttGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaa                                                                                          >  4:134036‑M2/1‑119 (MQ=255)                                                                            ttttGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaa                                                                                          <  3:134036‑M2/127‑9 (MQ=255)                                                                            ttttGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTgg                                                                    >  8:254743/1‑149 (MQ=255)                                                                              ttgggttgggTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGc                                                                   <  5:250178/148‑1 (MQ=255)                                                                                  gttgggtCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAAc                                                              >  5:309282/1‑149 (MQ=255)                                                                                  gttgggtCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAAc                                                              <  6:309282/149‑1 (MQ=255)                                                                                                    ttGGGAACAGGTCGCGGGAGGCGTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGGGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAg                                            <  7:143384/149‑1 (MQ=255)                                                                                                        gAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGc                                          >  5:115204/1‑147 (MQ=255)                                                                                                         aaCAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAg                                       <  3:95980/149‑1 (MQ=255)                                                                                                               tCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGcgccgc                                 <  1:27929/149‑1 (MQ=255)                                                                                                                             ttCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAgg                    <  1:15543/148‑1 (MQ=255)                                                                                                                                 ggCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaaccctggccacggtcac               <  4:123789‑M2/149‑84 (MQ=255)                                                                                                                                  gCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaaccctggccacggtcacc              <  6:25444‑M2/149‑85 (MQ=255)                                                                                                                                     cTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGcc           <  8:148695/149‑1 (MQ=255)                                                                                                                                      tttCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGcc           >  2:1891/1‑148 (MQ=255)                                                                                                                                       ttCGCGGGtagacccgctcctacaacagaaagcgctgcgtccattgtaggcgcgagcttgcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaacccctggccacggtcaccgaac          >  5:146384‑M1/1‑8 (MQ=255)                                                                                                                                       ttCGCGGGtaaacccgctcctacaacagaaagcgctgcgtccattgtaggcgcgagcttgcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaa                               <  3:134036‑M1/127‑120 (MQ=255)                                                                                                                                       ttCGCGGGtaaacccgctcctacaacagaaagcgctgcgtccattgtaggcgcgagcttgcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaa                               >  4:134036‑M1/1‑8 (MQ=255)                                                                                                                                       ttCGCGGGtaaaccagctcatacaacagaaagcgctgcgtccattgtaggcgcgagcttgccagcgaaaggcccggaacaggcctcccccgacctgttcccaaaccagcaatggacccaacacaaaaacctggccacggtcaccgaac          >  6:77331‑M1/1‑8 (MQ=255)                                                                                                                                          gcgGGCACGCGCGCGCCTACAAGGGACGCCGCGCTTTCTGTTGTCGGCGCGGGTTACCCCGCGAAGGCCGCGACGCCATCGGCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGAt      <  1:308711/149‑1 (MQ=255)                                                                                                                                          gcgGGCAAGCTCGCGCCTACAATGGACGGAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGAt      >  1:171777/1‑149 (MQ=255)                                                                                                                                          gcgGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGAt      <  8:5669/149‑1 (MQ=255)                                                                                                                                              gCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTAcccgcgaaagggccggaacaggcctcccgcgacctgttcccaacccagcaatggacccaacccaaaaccctggcacggtcaccgtacaacccgtga  <  3:43187‑M2/149‑97 (MQ=255)                                                                                                                                              |                                                                                                                                                     GCAGTTCCGGGGCCGTCGGGGCCGCGGCGACGACAGGTGCGGTCATCACGGGTTGTTCGGTGACCGTGGCCAGGGTTTTGGGTTGGGTCCATTGCTGGGTTGGGAACAGGTCGCGGGAGGCCTGTTCCGGCCCTTTCGCGGGCAAGCTCGCGCCTACAATGGACGCAGCGCTTTCTGTTGTAGGAGCGGGTTTACCCGCGAAGGCCGCGACGCCATCGTCCTGGCCAAACCAATGGTCCGGTGCCCAGGCCAGCGCCGCGCTCACGCCGAGGAAGCCGGCCCAGATGACT  >  NC_002947/3944089‑3944378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.