New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4017634	48 (0.980)	3 (0.060)	3/252	NT	6.5%	coding (69/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4017666	40 (0.850)					coding (101/1662 nt)	PP_3545	two‑component system sensor histidine kinase/response regulator

CTCGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4017482‑4017634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGT  <  NC_002947/4017666‑4017628                                                                                                                                                                                                  CTCGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACG                                             >  1:221211/1‑149  TCGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGC                                            >  6:34084/1‑149                                            CGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGT  <  2:46938/149‑1                                                                        TCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCG   <  3:295120/120‑1                                                                        TCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCG   >  4:295120/1‑120                                                                                                                                                                                                  CTCGGGCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4017482‑4017634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgTCATGCGCCTGAACGTTGTCTTCGCGCGCTGCCAGGCGT  <  NC_002947/4017666‑4017628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.