New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4017634 | 48 (0.980) | 3 (0.060) | 3/252 | NT | 6.5% | coding (69/1662 nt) | PP_3545 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | = 4017666 | 40 (0.850) | coding (101/1662 nt) | PP_3545 | two‑component system sensor histidine kinase/response regulator |
GCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGACTACGTACC > NC_002947/4017518‑4017813 | gCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGa > 6:205060/1‑149 (MQ=255) cgACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCtt < 3:110646/149‑1 (MQ=255) cTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc < 3:219110/149‑1 (MQ=255) cTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc < 5:205060/149‑1 (MQ=255) atcatcAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGc > 5:124474/1‑149 (MQ=255) atcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTg < 5:165172/149‑1 (MQ=255) cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc < 4:294903/149‑1 (MQ=255) cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc < 5:159755/149‑1 (MQ=255) aTGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc < 5:234448/149‑1 (MQ=255) aTGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc > 6:234448/1‑149 (MQ=255) aTGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc < 5:173411/149‑1 (MQ=255) tGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCg > 2:156262/1‑149 (MQ=255) gCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTg > 1:285309/1‑110 (MQ=255) gCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTg < 2:285309/110‑1 (MQ=255) aGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGacaaca < 8:147276/122‑1 (MQ=255) aGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGacaaca > 7:147276/1‑122 (MQ=255) gCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGgct > 3:20649/1‑93 (MQ=255) gCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGgct < 4:20649/93‑1 (MQ=255) gCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgcagca > 5:204822/1‑149 (MQ=255) cGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATgcgc > 3:97885/1‑149 (MQ=255) tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc < 8:95847/99‑1 (MQ=255) tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc > 7:95847/1‑99 (MQ=255) ccGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCa < 1:156262/149‑1 (MQ=255) gATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCAt > 7:56838/1‑148 (MQ=255) gATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATc < 2:187016/149‑1 (MQ=255) gCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGcgcgcg > 3:216190/1‑148 (MQ=255) cAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCAt > 1:249290/1‑130 (MQ=255) cAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCAt < 2:249290/130‑1 (MQ=255) aGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGaaa > 3:99466/1‑149 (MQ=255) aGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGaaa < 8:151746/149‑1 (MQ=255) tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGgcgcgc > 6:260412/1‑140 (MQ=255) tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGgcgcgc < 5:260412/140‑1 (MQ=255) gAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGc < 7:273019/119‑1 (MQ=255) gAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGc > 8:273019/1‑119 (MQ=255) aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGGCAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGt > 1:140853/1‑148 (MQ=255) aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctgatgatcgaaaccagcaactatagtcgccg < 2:46938‑M2/149‑111 (MQ=255) aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGt > 1:108478/1‑148 (MQ=255) cGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga > 4:295120‑M2/1‑38 (MQ=255) cGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga < 3:295120‑M2/120‑83 (MQ=255) cGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTa < 8:56838/149‑1 (MQ=255) cTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCg < 4:31263/149‑1 (MQ=255) aGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCt > 5:212039/1‑149 (MQ=255) cgcgAAGACAACGTTCAGGCGCATGGCAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGt < 2:140853/149‑1 (MQ=255) aaCGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGt > 7:34218/1‑149 (MQ=255) gTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTgg > 2:170951/1‑149 (MQ=255) gcgcATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGACTa > 2:228335/1‑149 (MQ=255) cgcATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGACTAc < 6:160136/149‑1 (MQ=255) aTGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGACTACGTa < 2:108478/149‑1 (MQ=255) gACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGACTACGTAcc > 6:100467/1‑149 (MQ=255) | GCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCGAGGCTTCGTGCCGCAGGTTGGCGACTACGTACC > NC_002947/4017518‑4017813 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |