New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4017634 | 48 (0.980) | 3 (0.060) | 3/252 | NT | 6.5% | coding (69/1662 nt) | PP_3545 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | = 4017666 | 40 (0.850) | coding (101/1662 nt) | PP_3545 | two‑component system sensor histidine kinase/response regulator |
GCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCG > NC_002947/4017487‑4017780 | gCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTgg < 5:127632/149‑1 (MQ=255) gCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTgg < 4:186626/149‑1 (MQ=255) cGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGc < 2:303469/149‑1 (MQ=255) ttCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAgcgcgc < 5:37531/149‑1 (MQ=255) tCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGa > 6:165172/1‑149 (MQ=255) cGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGa > 7:151746/1‑148 (MQ=255) aTAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGTTTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGtt > 3:294903/1‑148 (MQ=255) gCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAg < 3:265779/148‑1 (MQ=255) cGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGgc > 4:219110/1‑149 (MQ=255) cGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGgc < 5:34084/149‑1 (MQ=255) gCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGa > 6:205060/1‑149 (MQ=255) cggcgACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcgt < 2:46938‑M1/149‑40 (MQ=255) cgACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCtt < 3:110646/149‑1 (MQ=255) cTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc < 5:205060/149‑1 (MQ=255) cTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc < 3:219110/149‑1 (MQ=255) atcatcAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCa < 2:288985/115‑1 (MQ=255) atcatcAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCa > 1:288985/1‑115 (MQ=255) atcatcAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGc > 5:124474/1‑149 (MQ=255) atcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTg < 5:165172/149‑1 (MQ=255) tcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcg < 3:295120‑M1/120‑39 (MQ=255) tcaGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGtcatgcgcctgaacgttgtcttcgcgcgctgccaggcg > 4:295120‑M1/1‑82 (MQ=255) ggCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGgcg > 8:264068/1‑106 (MQ=255) ggCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGgcg < 7:264068/106‑1 (MQ=255) cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc < 5:159755/149‑1 (MQ=255) cccTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAAc < 4:294903/149‑1 (MQ=255) aTGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc > 6:234448/1‑149 (MQ=255) aTGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc < 5:173411/149‑1 (MQ=255) aTGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGc < 5:234448/149‑1 (MQ=255) tGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCg > 2:156262/1‑149 (MQ=255) gCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTg < 2:285309/110‑1 (MQ=255) gCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTg > 1:285309/1‑110 (MQ=255) aGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGacaaca > 7:147276/1‑122 (MQ=255) aGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGacaaca < 8:147276/122‑1 (MQ=255) gCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGgct > 3:20649/1‑93 (MQ=255) gCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGgct < 4:20649/93‑1 (MQ=255) gCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCgcagca > 5:204822/1‑149 (MQ=255) cGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATgcgc > 3:97885/1‑149 (MQ=255) tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc > 7:95847/1‑99 (MQ=255) tttGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTc < 8:95847/99‑1 (MQ=255) ccGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCa < 1:156262/149‑1 (MQ=255) gATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCAt > 7:56838/1‑148 (MQ=255) gATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATc < 2:187016/149‑1 (MQ=255) gCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGcgcgcg > 3:216190/1‑148 (MQ=255) cAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCAt < 2:249290/130‑1 (MQ=255) cAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCAt > 1:249290/1‑130 (MQ=255) aGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGaaa < 8:151746/149‑1 (MQ=255) aGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGaaa > 3:99466/1‑149 (MQ=255) tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGgcgcgc < 5:260412/140‑1 (MQ=255) tGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGgcgcgc > 6:260412/1‑140 (MQ=255) gAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGc > 8:273019/1‑119 (MQ=255) gAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGc < 7:273019/119‑1 (MQ=255) aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGGCAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGt > 1:140853/1‑148 (MQ=255) aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctgatgatcgaaaccagcaactatagtcgccg < 2:46938‑M2/149‑111 (MQ=255) aCGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGt > 1:108478/1‑148 (MQ=255) cGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga > 4:295120‑M2/1‑38 (MQ=255) cGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGAcaggcgtgcttccagttctgcgacgcgcgcctgcaatcgggcaaaggacgcaagcgtatctggctgcatgacgagggcctga < 3:295120‑M2/120‑83 (MQ=255) cGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTa < 8:56838/149‑1 (MQ=255) cTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCg < 4:31263/149‑1 (MQ=255) | GCGGATCATTCGCTCGTTCTGATAGCGAGGGGCCCGAGCGGCGACTATAGTTGCTGGTTTCGATCATCAGGCCCTCGTCATGCAGCCAGATACGCTTGCGTCCTTTGCCCGATTGCAGGCGCGCGTCGCAGAACTGGAAGCACGCCTGGCAGCGCGCGAAGACAACGTTCAGGCGCATGACAGGCTGCTTGGAGAACTGCTCGACAACAGCGTGGCCAACGTGTTTGCGGCCGACCGCAGCATGCGCCTCTTGGCCATCAACCGCACGGCGCGCGAAACCTTCGAACGTTACCG > NC_002947/4017487‑4017780 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |