| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4342346 = | 39 (0.800) | 3 (0.070) | 3/246 | NT | 8.2% | coding (55/810 nt) | PP_3816 | polyamine ABC transporter permease |
| ? | NC_002947 | 4342387 = | 31 (0.680) | coding (96/810 nt) | PP_3816 | polyamine ABC transporter permease | |||||
TCCGGGTTGGAGAAAAACTGGCCGTACCACTTGAAGGTCCAGCCCGGTGGCGGGAACACCAGCCACTGTGACGAGCCGAATGACAGCAACACGATGAACACCACCGGCAGCAGCAGGAAGGCCGCGATGACCCCGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4342485‑4342346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtggtGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGA > NC_002947/4342387‑4342494 TCCGGGTTGGAGAAAAACTGGCCGTACCACTTGAAGGTCCAGCCCGGTGGCGGGAACACCAGCCACTGTGACGAGCCGAATGACAGCAACACGATGAACACCACCGGCAGCAGCAGGAAGGCCGCGATGACCCCGGTG > 7:277616/1‑138TCCGGGTTGGAGAAAAACTGGCCGTACCACTTGAAGGTCCAGCCCGGTGGCGGGAACACCAGCCACTGTGACGAGCCGAATGACAGCAACACGATGAACACCACCGGCAGCAGCAGGAAGGCCGCGATGACCCCGGTG < 8:277616/138‑1 ACGATGAACACCACCGGCAGCAGCAGGAAGGCCGCGATGACCCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACG < 5:284701/127‑1 ACGATGAACACCACCGGCAGCAGCAGGAAGGCCGCGATGACCCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACG > 6:284701/1‑127 ACCACCGGCAGCAGCAGGAAGGCCGCGATGACCCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGA > 8:134655/1‑149 GTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAC > 3:256661/1‑68 GTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAC < 4:256661/68‑1 TCCGGGTTGGAGAAAAACTGGCCGTACCACTTGAAGGTCCAGCCCGGTGGCGGGAACACCAGCCACTGTGACGAGCCGAATGACAGCAACACGATGAACACCACCGGCAGCAGCAGGAAGGCCGCGATGACCCCGGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4342485‑4342346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtggtGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGA > NC_002947/4342387‑4342494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |