New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4342346 =	39 (0.800)	3 (0.070)	3/246	NT	8.2%	coding (55/810 nt)	PP_3816	polyamine ABC transporter permease
	?	NC_002947	4342387 =	31 (0.680)					coding (96/810 nt)	PP_3816	polyamine ABC transporter permease

TACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAGGTGGCCGTGC  >  NC_002947/4342241‑4342526                                                                                                                                                   |                                                                                                                                            tacctgAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGgtgt                                                                                                                                            >  2:103473/1‑148 (MQ=255)       aaGCTGCAGCCGGAATCCCCGGTTTGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCTGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCg                                                                                                                                      <  3:45054/148‑1 (MQ=255)       aaGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATc                                                                                                                                       <  7:44629/147‑1 (MQ=255)            gCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGc                                                                                                                                <  6:161867/149‑1 (MQ=255)             cAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCt                                                                                                                               >  4:43764/1‑149 (MQ=255)                  ggAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTg                                                                                                                              <  2:189094/145‑1 (MQ=255)                  ggAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTg                                                                                                                              >  1:189094/1‑145 (MQ=255)                             cgtaccacttgaaggtccagcccggtggcgggaacaccagccactgtgacgagccgaatgacagcaacacgatgaacACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCgt                                                                                                                                     >  6:284701‑M1/78‑127 (MQ=255)                             cgtaccacttgaaggtccagcccggtggcgggaacaccagccactgtgacgagccgaatgacagcaacacgatgaacACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCgt                                                                                                                                     <  5:284701‑M1/50‑1 (MQ=255)                                gCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAg                                                                                                            <  3:144584/149‑1 (MQ=255)                                     gcgAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCt                                                                                                       <  5:150930/149‑1 (MQ=255)                                                  ccATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGtt                                                                                                 >  2:291877/1‑142 (MQ=255)                                                  ccATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGtt                                                                                                 <  1:291877/142‑1 (MQ=255)                                                   cATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTACCGCCAc                                                                                         >  5:302420/1‑149 (MQ=255)                                                     tGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCg                                                                                       <  3:43764/149‑1 (MQ=255)                                                     tGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCg                                                                                       <  6:146832/149‑1 (MQ=255)                                                        tCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGc                                                                                    >  5:234844/1‑149 (MQ=255)                                                                 ccAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTc                                                                                                                   >  6:186809/1‑109 (MQ=255)                                                                 ccAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTc                                                                                                                   <  5:186809/109‑1 (MQ=255)                                                                 ccAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTc                                                                           <  1:60692/149‑1 (MQ=255)                                                                              ccgcccgcTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCt                                                                                   <  3:127279/128‑1 (MQ=255)                                                                              ccgcccgcTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCAGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCt                                                                                   >  4:127279/1‑128 (MQ=255)                                                                                      tGCGGACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTtc                                                      <  6:234844/149‑1 (MQ=255)                                                                                       gCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAcc                                                                              >  1:111823/1‑124 (MQ=255)                                                                                       gCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAcc                                                                              <  2:111823/124‑1 (MQ=255)                                                                                        cGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACGTTCAAGTGGTACGGCCAGTTTTtc                                                      <  1:103473/147‑1 (MQ=255)                                                                                                 acgatgaacaccaccggcagcagcaggaaggccgcgatgaccccggtggtGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACg                                                                 <  5:284701‑M2/77‑1 (MQ=255)                                                                                                 acgatgaacaccaccggcagcagcaggaaggccgcgatgaccccggtggtGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACg                                                                 >  6:284701‑M2/51‑127 (MQ=255)                                                                                                         gACCACCGGGGTCATCGCGGCCTTCCTGCTACTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGtggatg                                    >  5:187036/1‑148 (MQ=255)                                                                                                          accaccggcagcagcaggaaggccgcgatgaccccggtggtGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGtggatgga                                  >  8:134655‑M2/42‑149 (MQ=255)                                                                                                            CACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGa                                           <  8:277616‑M1/138‑1 (MQ=255)                                                                                                            CACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGa                                           >  7:277616‑M1/1‑138 (MQ=255)                                                                                                                   gTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACt                         >  5:306368/1‑149 (MQ=255)                                                                                                                          cgGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCAc                          >  7:158600/1‑141 (MQ=255)                                                                                                                          cgGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCAc                          <  8:158600/141‑1 (MQ=255)                                                                                                                            gCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCt                >  4:114418/1‑149 (MQ=255)                                                                                                                                tCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAg            >  2:126891/1‑149 (MQ=255)                                                                                                                                 ccTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAgg           >  8:163302/1‑149 (MQ=255)                                                                                                                                   tgctgctgcCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAGGTg         >  3:97529/1‑149 (MQ=255)                                                                                                                                       gctgcCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAGGTGGCCg     >  3:253173/1‑149 (MQ=255)                                                                                                                                         tgcCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCTACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAGGTGGCCGTg   >  8:103039/1‑149 (MQ=255)                                                                                                                                          gcCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAGGTGGCCGTGc  >  6:187136/1‑149 (MQ=255)                                                                                                                                              gtggtGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAc                                                                               >  3:256661‑M2/6‑68 (MQ=255)                                                                                                                                              gtggtGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAc                                                                               <  4:256661‑M2/63‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                            TACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATGGACGCCGCACTGGCCAGCCTGAAGGTGGCCGTGC  >  NC_002947/4342241‑4342526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.