New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4342346 =	39 (0.800)	3 (0.070)	3/246	NT	8.2%	coding (55/810 nt)	PP_3816	polyamine ABC transporter permease
	?	NC_002947	4342387 =	31 (0.680)					coding (96/810 nt)	PP_3816	polyamine ABC transporter permease

GCCGCACTCTTGGTAGCGATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATG  >  NC_002947/4342199‑4342492                                                                                                                                                    |                                                                                                                                                   gccgcACTCTTGGTAGCGATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGac                                                                                                                                                   >  8:40766/1‑149 (MQ=255)             gTAGCGATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCAt                                                                                                                                       >  2:60692/1‑149 (MQ=255)             gTAGCGATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACAGGCCTGAACATGACAACCGGGGTCAt                                                                                                                                       >  3:226353/1‑149 (MQ=255)              tAGCGATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATc                                                                                                                                      <  3:289784/149‑1 (MQ=255)                gCGATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATcgc                                                                                                                                    >  2:189199/1‑149 (MQ=255)                  gATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCgg                                                                                                                                  >  5:161867/1‑149 (MQ=255)                        ccTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTcc                                                                                                                            >  6:150930/1‑149 (MQ=255)                               ctctTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGGCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCctgctgc                                                                                                                      <  4:229787/148‑1 (MQ=255)                                 cttctACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCtgctgctgc                                                                                                                   >  4:144584/1‑149 (MQ=255)                                    ctACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCtgctgctgc                                                                                                                   <  1:189199/146‑1 (MQ=255)                                       cctgtacctgAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCggtg                                                                                                              <  3:58001/148‑1 (MQ=255)                                        tccatccactccgggttggagaaaaactggccgtaccacttgaaggtccagcccggtggcgggaacaccagccactgtgacgagccgaatgacagcaacacgatgaacACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCggtggt                                                                                                            >  8:134655‑M1/109‑149 (MQ=255)                                        ctgtacctgCAGCTGCAGCCGGAATCCCCGGTTGTCAACGCTATGGAAACTCCCATTCTCCTGGCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGTGGTCCTCGCGGCCTTCCTGCTGCTGCCggtggt                                                                                                            <  2:213449/149‑1 (MQ=255)                                           tacctgAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGgtgt                                                                                                          >  2:103473/1‑148 (MQ=255)                                                 aaGCTGCAGCCGGAATCCCCGGTTTGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCTGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCg                                                                                                    <  3:45054/148‑1 (MQ=255)                                                 aaGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATc                                                                                                     <  7:44629/147‑1 (MQ=255)                                                      gCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGc                                                                                              <  6:161867/149‑1 (MQ=255)                                                       cAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCt                                                                                             >  4:43764/1‑149 (MQ=255)                                                            ggAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTg                                                                                            >  1:189094/1‑145 (MQ=255)                                                            ggAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTg                                                                                            <  2:189094/145‑1 (MQ=255)                                                                       cgtaccacttgaaggtccagcccggtggcgggaacaccagccactgtgacgagccgaatgacagcaacacgatgaacACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCgt                                                                                                   <  5:284701‑M1/50‑1 (MQ=255)                                                                       cgtaccacttgaaggtccagcccggtggcgggaacaccagccactgtgacgagccgaatgacagcaacacgatgaacACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCgt                                                                                                   >  6:284701‑M1/78‑127 (MQ=255)                                                                          gCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAg                                                                          <  3:144584/149‑1 (MQ=255)                                                                               gcgAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCt                                                                     <  5:150930/149‑1 (MQ=255)                                                                                     gtccagcccggtggcgggaacaccagccactgtgacgagccgaatgacagcaacacgatgaacaccac                                                                                                                                                >  3:256661‑M1/64‑68 (MQ=255)                                                                                     gtccagcccggtggcgggaacaccagccactgtgacgagccgaatgacagcaacacgatgaacaccac                                                                                                                                                <  4:256661‑M1/5‑1 (MQ=255)                                                                                        aCTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATcgcg                                                                                                                                   >  4:134594/1‑78 (MQ=255)                                                                                        aCTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATcgcg                                                                                                                                   <  3:134594/78‑1 (MQ=255)                                                                                            ccATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGtt                                                               <  1:291877/142‑1 (MQ=255)                                                                                            ccATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGtt                                                               >  2:291877/1‑142 (MQ=255)                                                                                             cATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTACCGCCAc                                                       >  5:302420/1‑149 (MQ=255)                                                                                               tGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCg                                                     <  6:146832/149‑1 (MQ=255)                                                                                               tGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCg                                                     <  3:43764/149‑1 (MQ=255)                                                                                                gCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCggtggt                                                                                                            >  4:272961/1‑93 (MQ=255)                                                                                                gCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCggtggt                                                                                                            <  3:272961/93‑1 (MQ=255)                                                                                                  tCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGc                                                  >  5:234844/1‑149 (MQ=255)                                                                                                           ccAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTc                                                                                 <  5:186809/109‑1 (MQ=255)                                                                                                           ccAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTc                                                                                 >  6:186809/1‑109 (MQ=255)                                                                                                           ccAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTc                                         <  1:60692/149‑1 (MQ=255)                                                                                                                        ccgcccgcTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCt                                                 <  3:127279/128‑1 (MQ=255)                                                                                                                        ccgcccgcTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCAGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCt                                                 >  4:127279/1‑128 (MQ=255)                                                                                                                                tGCGGACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTtc                    <  6:234844/149‑1 (MQ=255)                                                                                                                                 gCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAcc                                            <  2:111823/124‑1 (MQ=255)                                                                                                                                 gCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGAcc                                            >  1:111823/1‑124 (MQ=255)                                                                                                                                  cGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACGTTCAAGTGGTACGGCCAGTTTTtc                    <  1:103473/147‑1 (MQ=255)                                                                                                                                                   gACCACCGGGGTCATCGCGGCCTTCCTGCTACTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGtggatg  >  5:187036/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCCGCACTCTTGGTAGCGATCACCCTGGTGCTCTTCTACCTGTACCTGAAGCTGCAGCCGGAATCCCCGGTTGGCAACGCGAGGTAAACTGCCATGCTCCTGTCTCCCAATGCCATGGGCCGCCCGCTGCGTACGGGCCTGTACCTGACCACCGGGGTCATCGCGGCCTTCCTGCTGCTGCCGGTGGTGTTCATCGTGTTGCTGTCATTCGGCTCGTCACAGTGGCTGGTGTTCCCGCCACCGGGCTGGACCTTCAAGTGGTACGGCCAGTTTTTCTCCAACCCGGAGTGGATG  >  NC_002947/4342199‑4342492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.