New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4348206 =	NA (NA)	4 (0.090)	4/248	NT	NA	coding (430/1422 nt)	PP_3820	group II intron‑encoding maturase
	?	NC_002947	4392679 =	NA (NA)					coding (336/1422 nt)	PP_3868	group II intron‑encoding maturase

CGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4348360‑4348206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactgcTTGGGGATGGTATT‑CACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGG  >  NC_002947/4392679‑4392823                                                                                                                                                                                                                                                                                                               CGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAG                                                                                                                                                          <  2:82511/149‑1     AAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACT                                                                                                                                                      >  4:148607/1‑149     AAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTAGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCAC                                                                                                                                                       <  4:245409/148‑1      AACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTG                                                                                                                                                     <  7:153853/149‑1      AACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACT                                                                                                                                                      >  8:153853/1‑148       ACAGTATTGGCCAACCCTCAAGTCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGC                                                                                                                                                    <  5:182087/149‑1                                                          CCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCTTGGGGCTGGTATT‑CACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATA                                                                                                >  2:63438/1‑149                                                             AGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCTTGGGGATGGTATT‑CACCGGCCAGCAACCTGGCCTTGAGGGTTG                                                                                                       <  1:80486/139‑1                                                             AGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCTTGGGGATGGTATT‑CACCGGCCAGCAACCTGGCCTTGAGGGTTG                                                                                                       >  2:80486/1‑139                                                                  TGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCTTGGGGCTGGTATTCCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTC                                                                                         <  1:63438/149‑1                                                                                                                                                      CACTGCTTGGGGATGGTATT‑CACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGA    <  7:106277/149‑1                                                                                                                                                       ACTGATTGGGGATGGTATT‑CACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCATTACTGTTTCACGTATCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAG   <  3:228946/149‑1                                                                                                                                                        CTGCTTGGGGATGGTATT‑CACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGG  <  4:295439/149‑1                                                                                                                                                                                                                                                                                                               CGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4348360‑4348206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactgcTTGGGGATGGTATT‑CACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGG  >  NC_002947/4392679‑4392823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.