New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4348206 =	NA (NA)	4 (0.090)	4/248	NT	NA	coding (430/1422 nt)	PP_3820	group II intron‑encoding maturase
	?	NC_002947	4392679 =	NA (NA)					coding (336/1422 nt)	PP_3868	group II intron‑encoding maturase

ATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGTATTTCAACCGCTCGCACTGCTTGGG  >  NC_002947/4392535‑4392683                                                                                                                                                 |     atcgCTTTATTCCGATAACAGTGGGTCCAAGAACGGGGTTCGCTGCTGCTGCAGTGGTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGTATTTCAACCGCTCGCACTGCTTggg  <  2:154349/146‑1 (MQ=1)                                                                                                                                                 |     ATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGTATTTCAACCGCTCGCACTGCTTGGG  >  NC_002947/4392535‑4392683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.