New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4362772	43 (0.880)	3 (0.060)	3/254	NT	6.8%	intergenic (‑293/‑143)	PP_5634/adhP	hypothetical protein/alcohol dehydrogenase
	?	NC_002947	= 4362806	41 (0.860)					intergenic (‑327/‑109)	PP_5634/adhP	hypothetical protein/alcohol dehydrogenase

GCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4362622‑4362772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAGAAAAGCCCGCGGCAAGGATGCGGCGGGCTGCAAGAACATACGGAGCAGGGCCAGTGTGCCCATCCGGATGTCGACATTTCGTGAAGGTCAGGTCATGAGGCT  <  NC_002947/4362806‑4362662                                                                                                                                                                                                                                                                                                          GCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTT                                                                                                                                                      >  4:242345/1‑148   TTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCC                                                                                                                                                   >  4:50257/1‑149           GACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTC                                                                                                                                                    >  5:104818/1‑140           GACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTC                                                                                                                                                    <  6:104818/140‑1                                                TGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAGAA                                                                                                      <  3:111552/149‑1                                                                                                                    CCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAG                                                                                                        >  7:39772/1‑79                                                                                                                    CCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAG                                                                                                        <  8:39772/79‑1                                                                                                                                                    TTCCACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAGAAAAGCCCGCGGCAAGGATGCGGCGGGCTGCAAGAACATACGGAGCAGGGCCAGTGTGCCCATCCGGATGTCGACATTTCGTGAAGGTCAGGTCATGAGGCT  >  3:50257/1‑149                                                                                                                                                       CACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAGAAAAGCCCGCGGCAAGGATGCGGCGGGCTGCAAGAACATACGGAGCAGGGCCAGTGTGCCCATC                                        >  3:259274/1‑108                                                                                                                                                       CACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAGAAAAGCCCGCGGCAAGGATGCGGCGGGCTGCAAGAACATACGGAGCAGGGCCAGTGTGCCCATC                                        <  4:259274/108‑1                                                                                                                                                                                                                                                                                                          GCTTTTTTATGACCCTGCGCACTTCGTTGCAGATGATGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4362622‑4362772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccACAAAATTCCTGCGTATGCCTGGCTGGCCTTTGCGGAAAAAAGAAAAGCCCGCGGCAAGGATGCGGCGGGCTGCAAGAACATACGGAGCAGGGCCAGTGTGCCCATCCGGATGTCGACATTTCGTGAAGGTCAGGTCATGAGGCT  <  NC_002947/4362806‑4362662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.