New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4362772	43 (0.880)	3 (0.060)	3/254	NT	6.8%	intergenic (‑293/‑143)	PP_5634/adhP	hypothetical protein/alcohol dehydrogenase
	?	NC_002947	= 4362806	41 (0.860)					intergenic (‑327/‑109)	PP_5634/adhP	hypothetical protein/alcohol dehydrogenase

TGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCG  >  NC_002947/4362658‑4362948                                                                                                                                                     |                                                                                                                                               tgaCAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTtgt                                                                                                                                                <  2:24188/149‑1 (MQ=255)     aGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTggaa                                                                                                                                            >  3:50257‑M2/1‑145 (MQ=255)       ccTCATGACCTGACCTTCACGAAAAGTCGACATCCCGATGGGCACAATGGCCCTGCTCCCTATGTACTTGCAGCCCGCCGCATCCTTGCCGACGGCTTTTAGTTTTAACGCAAAGGCCAGCCAGGCATAAGCAGGAATTTTGTGGAAgc                                                                                                                                          >  7:133723/1‑149 (MQ=255)              acctgacctTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCAcc                                                                                                                                   <  1:56388/149‑1 (MQ=255)                ctgacctTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAAGAATTTTGTGGAAGCGCCCACCtt                                                                                                                                 <  4:146154/149‑1 (MQ=255)                  gacctTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGa                                                                                                                               >  5:228366/1‑149 (MQ=255)                      ttCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCt                                                                                                                                  <  6:201310/142‑1 (MQ=255)                      ttCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCt                                                                                                                                  >  5:201310/1‑142 (MQ=255)                      ttCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCAt                                                                                                                           >  2:55370/1‑149 (MQ=255)                       tCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCAt                                                                                                                           >  3:89841/1‑148 (MQ=255)                              aTGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGaa                                                                                                                   <  4:89841/149‑1 (MQ=255)                                 tCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAg                                                                                                                  >  1:235799/1‑147 (MQ=255)                                      aTCCGGCTGGGCACTCTGGCCCTGCTCCGTATGTTCTTGCTGCCCGGCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGAAAAGGCCAGCGAGGCATACGGAGGAATTTTGTGGAAGCGCCCACCTTGTCCATGACCTGAAGCAGtttt                                                                                                           <  8:133723/149‑1 (MQ=255)                                         cGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGc                                                                                                         <  7:72373/148‑1 (MQ=255)                                           gATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTg                                                                                                                                               <  4:259274‑M2/108‑2 (MQ=255)                                           gATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTg                                                                                                                                               >  3:259274‑M2/1‑107 (MQ=255)                                                gCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCg                                                                                                 >  2:191648/1‑149 (MQ=255)                                                 cacaCTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCgg                                                                                                >  6:306328/1‑149 (MQ=255)                                                      tGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGa                                                                                                                               <  8:19032/113‑1 (MQ=255)                                                        gCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGaa                                                                                                                   <  5:280609/123‑1 (MQ=255)                                                        gCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGaa                                                                                                                   >  6:280609/1‑123 (MQ=255)                                                          ccTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGCGCTTATCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCAACATGACCATGACCTGAAGCAGTTTTGACTGGGCACGCAAGGTCTa                                                                                       >  4:1111/1‑149 (MQ=255)                                                           cTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACTCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTAt                                                                                      <  5:306328/149‑1 (MQ=255)                                                             gCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGc                                                                                    >  8:25822/1‑149 (MQ=255)                                                                            gCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCa                                                                      <  7:25822/148‑1 (MQ=255)                                                                              aGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCAcc                                                                    >  4:79436/1‑148 (MQ=255)                                                                                 ccgccgCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCGCCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAg                                                                <  1:113476/149‑1 (MQ=255)                                                                                         tCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATc                                                        <  2:235799/149‑1 (MQ=255)                                                                                          ccTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCAc                                                                     >  7:97906/1‑135 (MQ=255)                                                                                          ccTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCAc                                                                     <  8:97906/135‑1 (MQ=255)                                                                                           cTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCgg                                                      <  6:228366/149‑1 (MQ=255)                                                                                                 gcgGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTc                                                             <  4:262996/136‑1 (MQ=255)                                                                                                 gcgGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTc                                                             >  3:262996/1‑136 (MQ=255)                                                                                                    ggCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACg                                             >  6:232791/1‑149 (MQ=255)                                                                                                         ttcttttTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTggaaaaaagaaaagcccgcggcaaggatgcggcgggctgcaagaacatacggagcagggccagtgtgcccatccggatgtcgacatttcgtgaaggtcaggtca                                        <  3:111552‑M2/149‑105 (MQ=255)                                                                                                           cttttTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTggaaaaaagaaaagcccgcggcaaggatgcggcggg                                                                                                            >  7:39772‑M2/1‑43 (MQ=255)                                                                                                           cttttTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTggaaaaaagaaaagcccgcggcaaggatgcggcggg                                                                                                            <  8:39772‑M2/79‑37 (MQ=255)                                                                                                            ttttttCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGctct                                     >  2:130563/1‑149 (MQ=255)                                                                                                             tttttCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGctct                                     >  2:216730/1‑148 (MQ=255)                                                                                                               tttCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAg                                          <  4:275514/141‑1 (MQ=255)                                                                                                               tttCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAg                                          >  3:275514/1‑141 (MQ=255)                                                                                                               tttCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCa                                   <  1:61734/148‑1 (MQ=255)                                                                                                                       aaGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAgctg                          <  1:191648/149‑1 (MQ=255)                                                                                                                        aGGCCAGCCAGGCATACGCTGGATTTTTGTTGTAGCGCGCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCATGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAgctgc                         <  3:1111/149‑1 (MQ=255)                                                                                                                            cagccagGCATACGCAGGAATTTCGTGGAAGCGCACACCTTGCCCATGCCCTGAAGCAGTTTTTCCGGGGCCGGCAAGGTCTATGCTATCCCGACGATCCCCCAAGCTGACATCGGATAGACACGGAGGCGCGCATGAAACGTGCGGTc                     >  1:201089/1‑149 (MQ=255)                                                                                                                              gccagGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGt                   >  5:11398/1‑149 (MQ=255)                                                                                                                              gccagGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGt                   <  1:55370/149‑1 (MQ=255)                                                                                                                                          cAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCg       <  3:1001/149‑1 (MQ=255)                                                                                                                                               aTTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTcgcg  <  6:11398/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               TGACAGCCTCATGACCTGACCTTCACGAAATGTCGACATCCGGATGGGCACACTGGCCCTGCTCCGTATGTTCTTGCAGCCCGCCGCATCCTTGCCGCGGGCTTTTCTTTTTTCCGCAAAGGCCAGCCAGGCATACGCAGGAATTTTGTGGAAGCGCCCACCTTGACCATGACCTGAAGCAGTTTTGCCTGGGCCGGCAAGGTCTATGCTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCG  >  NC_002947/4362658‑4362948

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.