New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4615591 =	NA (NA)	5 (0.110)	5/250	NT	15.3%	coding (1962/4593 nt)	PP_4085	rhs family protein
	?	NC_002947	4615615 =	29 (0.590)					coding (1986/4593 nt)	PP_4085	rhs family protein

TCCTGCTGCCAGAGCAGATTGCCGTGGCTGTCGTAGCCGTATTGCCGAGTCCGTCCGGCTGTATCGGTGACCTGGATGGGTAGCGCCCAATGTCGTAGGTATTTGATGTGTTCGCTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGcggccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4615737‑4615591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCAGCAGGACCCGCTGGGGCGCGAGACACAGTACCAATAC  >  NC_002947/4615615‑4615768                                                                                                                                                                                                                                                                                                               TCCTGCTGCCAGAGCAGATTGCCGTGGCTGTCGTAGCCGTATTGCCGAGTCCGTCCGGCTGTATCGGTGACCTGGATGGGTAGCGCCCAATGTCGTAGGTATTTGATGTGTTCGCTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGCG                                                                                                                                                          >  4:105922/1‑149      CTGCCAGAGCAGATTGCCGTGGCTGTCGTAGCCGTATTGCCGAGTCCGTCCGGCTGTATCGGTGACCTGGATGGGTAGCGCCCAATGTCGTAGGTATTTGATGTGTTCGCTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGCGGCC                                                                                                                                                       <  5:238474/147‑1                                                                                                           TGTGTTCGCTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCAC                                                        <  7:64548/141‑1                                                                                                           TGTGTTCGCTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCAC                                                        >  8:64548/1‑141                                                                                                                   CTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGG                                         >  3:194757/1‑148                                                                                                                   CTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGG                                         <  4:194757/148‑1                                                                                                                    TGCGGCCGAGGGGATCGCGGGTTTCGATCAGGCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCc                                       >  6:274580/1‑148                                                                                                                                                     GGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCAGCAGGACCCGCTGGGGCGCGAGACACAGTAC        <  5:70320/147‑1                                                                                                                                                      GCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCAGCAGGACCCGCTGGGGCGCGAGACACAGTACCAA     <  2:112875/149‑1                                                                                                                                                         GCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCAGCAGGACCCGCTGGGGCGCGAGACACAGTACCAATAC  >  7:30600/1‑149                                                                                                                                                                                                                                                                                                               TCCTGCTGCCAGAGCAGATTGCCGTGGCTGTCGTAGCCGTATTGCCGAGTCCGTCCGGCTGTATCGGTGACCTGGATGGGTAGCGCCCAATGTCGTAGGTATTTGATGTGTTCGCTGCGGCCGAGGGGATCGCGGGTTTCGATCAGGcggccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4615737‑4615591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCAGCAGGACCCGCTGGGGCGCGAGACACAGTACCAATAC  >  NC_002947/4615615‑4615768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.