New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4615591 =	NA (NA)	5 (0.110)	5/250	NT	15.3%	coding (1962/4593 nt)	PP_4085	rhs family protein
	?	NC_002947	4615615 =	29 (0.590)					coding (1986/4593 nt)	PP_4085	rhs family protein

ACTACTACTGGGGGCCACTGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGG  >  NC_002947/4615443‑4615701                                                                                                                                                     |                                                                                                               actactactGGGGGCCACTGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGgccgc                                                                                                                <  3:27384/149‑1 (MQ=255)   tactactGGGGGCCACTGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCt                                                                                                              >  5:173569/1‑149 (MQ=255)               ccACTGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCcg                                                                                                  >  4:71586/1‑149 (MQ=255)                  cTGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGa                                                                                               <  6:173569/149‑1 (MQ=255)                   tGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGAt                                                                                              >  3:94276/1‑149 (MQ=255)                   tGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGAt                                                                                              >  6:285233/1‑149 (MQ=255)                     tACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGAt                                                                                              <  3:156091/147‑1 (MQ=255)                         aGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATc                                                                                                          >  4:284547/1‑131 (MQ=255)                         aGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATc                                                                                                          <  3:284547/131‑1 (MQ=255)                              tataAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCg                                                                                   >  4:126148/1‑149 (MQ=255)                                     ccctCGACCCTCAGGTCAACTGCTGGCTGGCGTAAGCGATCGCCGGACAGTTTATCAAGCGCATCGACCCGCAAGGAGTCTAATGGCGCTACATCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGaa                                                                            <  8:202819/146‑1 (MQ=18)                                       aTCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCcg                                                                                                  >  3:215269/1‑125 (MQ=255)                                       aTCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCcg                                                                                                  <  4:215269/125‑1 (MQ=255)                                           aCCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACAGAtg                                                                      >  7:139650/1‑148 (MQ=255)                                           aCCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATc                                                                      <  3:126148/149‑1 (MQ=255)                                               tCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGaa                                                                            <  2:10254/139‑1 (MQ=255)                                               tCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGaa                                                                            >  1:10254/1‑139 (MQ=255)                                               tCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCaaa                                                                   >  2:98228/1‑148 (MQ=255)                                                cAGGGAAACTGCTGGCTGGCGGAAGTGATCGACGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAATCCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATa                                                                 <  6:224702/149‑1 (MQ=255)                                                         tgctgGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACa                                                        >  5:36450/1‑149 (MQ=255)                                                             ggctggcGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACAttcg                                                    >  2:80427/1‑147 (MQ=255)                                                                  gcGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACAt                                                       <  3:188715/141‑1 (MQ=255)                                                                  gcGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACAt                                                       >  4:188715/1‑141 (MQ=255)                                                                    ggAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTAc                                             >  8:264975/1‑149 (MQ=255)                                                                      aaGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGcc                                                                                    <  4:107380/108‑1 (MQ=255)                                                                            tCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAg                                     <  3:71586/149‑1 (MQ=255)                                                                             cGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAgg                                    >  6:99953/1‑149 (MQ=255)                                                                               ccGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCTCGATCCCCTTGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTc                                  <  1:80427/149‑1 (MQ=255)                                                                                 ggACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCAc                                <  7:264975/149‑1 (MQ=255)                                                                                 ggACAGTTGAGCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCAc                                <  7:227167/149‑1 (MQ=255)                                                                                     aGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAACTACCTACGACATTGGGCGCTACCCATCCAGGTCACCGa                             >  5:115453/1‑148 (MQ=255)                                                                                     aGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCCAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGAt                            <  1:98228/149‑1 (MQ=255)                                                                                          aTCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATACCCTAGGCCGCAGCGAACACATCAAATACCTACGACATAGGGCGCTACCCATCCAGGTACCCCATACAGc                       >  1:281028/1‑149 (MQ=14)                                                                                           tCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGcc                      >  1:112875/1‑149 (MQ=39)                                                                                               gcgcATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCcggac                  >  5:24148/1‑149 (MQ=39)                                                                                               gcgcATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCcggac                  >  3:196740/1‑149 (MQ=39)                                                                                                  cATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCcggacgga               <  4:63394/149‑1 (MQ=39)                                                                                                      gACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTc            <  5:99953/148‑1 (MQ=39)                                                                                                           gCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGt                                   <  3:198737/120‑1 (MQ=39)                                                                                                           gCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGt                                   >  4:198737/1‑120 (MQ=39)                                                                                                               ggaggCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACgg  <  5:285233/149‑1 (MQ=34)                                                                                                                                                     |                                                                                                               ACTACTACTGGGGGCCACTGTACGAGGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGG  >  NC_002947/4615443‑4615701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.