| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4615591 = | NA (NA) | 5 (0.110) | 5/250 | NT | 15.3% | coding (1962/4593 nt) | PP_4085 | rhs family protein |
| ? | NC_002947 | 4615615 = | 29 (0.590) | coding (1986/4593 nt) | PP_4085 | rhs family protein | |||||
GGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCA > NC_002947/4615468‑4615731 | tcctgctgccagagcagattgccgtggctgtcgtagccgtattgccgagtccgtccggctgtatcggtgacctggatgggtagcgcccaatgtcgtaggtatttgatgtgttcgctgcggccgaggggatcgcgggtttcgatcaggcg > 4:105922‑M2/148‑149 (MQ=255) tataAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCg > 4:126148/1‑149 (MQ=255) ctgccagagcagattgccgtggctgtcgtagccgtattgccgagtccgtccggctgtatcggtgacctggatgggtagcgcccaatgtcgtaggtatttgatgtgttcgctgcggccgaggggatcgcgggtttcgatcaggCGGcc < 5:238474‑M2/5‑1 (MQ=255) ccctCGACCCTCAGGTCAACTGCTGGCTGGCGTAAGCGATCGCCGGACAGTTTATCAAGCGCATCGACCCGCAAGGAGTCTAATGGCGCTACATCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGaa < 8:202819/146‑1 (MQ=18) aCCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACAGAtg > 7:139650/1‑148 (MQ=255) aCCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATc < 3:126148/149‑1 (MQ=255) tCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGaa < 2:10254/139‑1 (MQ=255) tCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGaa > 1:10254/1‑139 (MQ=255) tCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCaaa > 2:98228/1‑148 (MQ=255) cAGGGAAACTGCTGGCTGGCGGAAGTGATCGACGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAATCCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATa < 6:224702/149‑1 (MQ=255) tgctgGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACa > 5:36450/1‑149 (MQ=255) ggctggcGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACAttcg > 2:80427/1‑147 (MQ=255) gcGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACAt < 3:188715/141‑1 (MQ=255) gcGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACAt > 4:188715/1‑141 (MQ=255) ggAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTAc > 8:264975/1‑149 (MQ=255) aaGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGcc < 4:107380/108‑1 (MQ=255) tCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAg < 3:71586/149‑1 (MQ=255) cGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAgg > 6:99953/1‑149 (MQ=255) ccGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCTCGATCCCCTTGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTc < 1:80427/149‑1 (MQ=255) ggACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCAc < 7:264975/149‑1 (MQ=255) ggACAGTTGAGCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCAc < 7:227167/149‑1 (MQ=255) aGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAACTACCTACGACATTGGGCGCTACCCATCCAGGTCACCGa > 5:115453/1‑148 (MQ=255) aGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCCAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGAt < 1:98228/149‑1 (MQ=255) aTCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATACCCTAGGCCGCAGCGAACACATCAAATACCTACGACATAGGGCGCTACCCATCCAGGTACCCCATACAGc > 1:281028/1‑149 (MQ=14) tCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGcc > 1:112875/1‑149 (MQ=39) gcgcATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCcggac > 5:24148/1‑149 (MQ=39) gcgcATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCcggac > 3:196740/1‑149 (MQ=39) cATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCcggacgga < 4:63394/149‑1 (MQ=39) gACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTc < 5:99953/148‑1 (MQ=39) gCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGt > 4:198737/1‑120 (MQ=39) gCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGt < 3:198737/120‑1 (MQ=39) ggaggCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACgg < 5:285233/149‑1 (MQ=34) tgtgttcgctgcggccgaggggatcgcgggtttcgatcaggCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCAc > 8:64548‑M2/42‑141 (MQ=255) tgtgttcgctgcggccgaggggatcgcgggtttcgatcaggCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCAc < 7:64548‑M2/100‑1 (MQ=255) ctgcggccgaggggatcgcgggtttcgatcaggCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTgg < 4:194757‑M2/115‑1 (MQ=255) ctgcggccgaggggatcgcgggtttcgatcaggCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTgg > 3:194757‑M2/34‑148 (MQ=255) tgcggccgaggggatcgcgggtttcgatcaggCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTggcc > 6:274580‑M2/33‑148 (MQ=255) | GGTCTATAAGCACATCGACCCTCAGGGCAACTGCTGGCTGGCGGAAGTGATCGCCGGACAGTTGATCAAGCGCATCGACCCGCAAGGAGGCGAATGGCGCTACAGCTACGACGATATCGGCCGCCTGATCGAAACCCGCGATCCCCTCGGCCGCAGCGAACACATCAAATACCTACGACATTGGGCGCTACCCATCCAGGTCACCGATACAGCCGGACGGACTCGGCAATACGGCTACGACAGCCACGGCAATCTGCTCTGGCA > NC_002947/4615468‑4615731 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |