New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4972591 =	53 (1.080)	5 (0.110)	5/252	NT	9.0%	coding (957/1566 nt)	flgL	flagellar hook‑associated protein FlgL
	?	NC_002947	4972629 =	50 (1.060)					coding (919/1566 nt)	flgL	flagellar hook‑associated protein FlgL

ATCTCGCTGCGCGGTGTCGACTTCGAGATCAACCTGAACCTGGCGGAAGGTGACGATGCTGACGCCGTCGTTGCCGGCCATGTGTTCACCCTCGAAGCCAAGCCCGATACCCTCACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4972743‑4972591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGAA  >  NC_002947/4972629‑4972773                                                                                                                                                                                                                                                                                                            ATCTCGCTGCGCGGTGTCGACTTCGAGATCAACCTGAACCTGGCGGAAGGTGACGATGCTGACGCCGTCGTTGCCGGCCATGTGTTCACCCTCGAAGCCAAGCCCGATACCCTCACTGCGACGCGTAGCGCGGGCGACCCGTCGACGGC                                                                                                                                                       >  3:169754/1‑149    TCGCTGCGCGGTGTCGACTTCGAGATCAACCTGAACCTGGCGGAAGGTGACGATGCTGACGCCGTCGTTGCCGGCCATGTGTTCACCCTCGAAGCCAAGCCCGATACCCTCACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCG                                                                                                                                                      >  1:55350/1‑147      GCTGCGCGGTGTCGACTTCGAGATCAACCTGAACCTGGCGGAAGGTGACGATGCTGACGCCGTCGTTGCCGGCCATGTGTTCACCCTCGAAGCCAAGCCCGATACCCTCACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCGCAG                                                                                                                                                   <  8:94904/148‑1      GCTGCGCGGTGTCGACTTCGAGATCAACCTGAACCTGGCGGAAGGTGACGATGCTGACGCCGTCGTTGCCGGCCATGTGTTCACCCTCGAAGCCAAGCCCGATACCCTCACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCG                                                                                                                                                      <  2:198211/145‑1      GCTGCGCGGTGTCGACTTCGAGATCAACCTGAACCTGGCGGAAGGTGACGATGCTGACGCCGTCGTTGCCGGCCATGTGTTCACCCTCGAAGCCAAGCCCGATACCCTCACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGC                                                                                                                                                       <  1:177568/144‑1                                                                                                               CCTCACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCG                                         >  1:190255/1‑149                                                                                                                  CACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAA                                                     <  3:25897/134‑1                                                                                                                  CACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAA                                                     >  4:25897/1‑134                                                                                                                     TGCGACGCGTAGCGCGGGCAACCCGTCGACGGCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGC                                     >  5:14334/1‑147                                                                                                                                              TCGACGGCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTG          <  2:190255/149‑1                                                                                                                                                      GCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGAA  <  4:95779/149‑1                                                                                                                                                      GCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGA   <  7:94904/148‑1                                                                                                                                                                                                                                                                                                            ATCTCGCTGCGCGGTGTCGACTTCGAGATCAACCTGAACCTGGCGGAAGGTGACGATGCTGACGCCGTCGTTGCCGGCCATGTGTTCACCCTCGAAGCCAAGCCCGATACCCTCACTGCGACGCGTAGCGCGGGCAACCCGTCGACGGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4972743‑4972591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGAA  >  NC_002947/4972629‑4972773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.