New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4972591 =	53 (1.080)	5 (0.110)	5/252	NT	9.0%	coding (957/1566 nt)	flgL	flagellar hook‑associated protein FlgL
	?	NC_002947	4972629 =	50 (1.060)					coding (919/1566 nt)	flgL	flagellar hook‑associated protein FlgL

GCGCATACAGAGAATACTCGGTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGAA  >  NC_002947/4972485‑4972773                                                                                                                                                 |                                                                                                                                                 cgcggtgtcgacttcgagatcaacctgaacctggcggaaggtgacgatgctgacgccgtcgttgccggccatgtgttcaccctcgaagccaagcccgataccctcaCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAgg                                                                                                                                              >  1:190255‑M1/107‑149 (MQ=255)  cgcATACAGAGAATACTCGGTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAg                                                                                                                                               <  1:182992/147‑1 (MQ=255)        cAGAGAATACTCGGTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCgg                                                                                                                                       <  5:38691/149‑1 (MQ=255)         agagAATACTCGGTGTCGCTGGTGAAGCGGATCACCGCGCCGTAGCTTCGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGCTCACCTGCGCCGTCGACGGGTTGCCCTCGCTACGCGTCGCAGTGACGGTATCggg                                                                                                                                      >  1:183774/1‑149 (MQ=255)           agaATACTCGGTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGggct                                                                                                                                    >  5:270769/1‑149 (MQ=255)             ttcgagatcaacctgaacctggcggaaggtgacgatgctgacgccgtcgttgccggccatgtgttcaccctcgaagccaagcccgataccctcaCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTg                                                                                                                                                 >  4:25897‑M1/95‑134 (MQ=255)             ttcgagatcaacctgaacctggcggaaggtgacgatgctgacgccgtcgttgccggccatgtgttcaccctcgaagccaagcccgataccctcaCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTg                                                                                                                                                 <  3:25897‑M1/40‑1 (MQ=255)                  tCGGTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTc                                                                                                                             >  1:247550/1‑149 (MQ=255)                    ggTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTc                                                                                                                             <  1:29305/147‑1 (MQ=255)                    ggTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGa                                                                                                                           <  7:292485/149‑1 (MQ=255)                      tgtCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAgg                                                                                                                         <  2:111931/149‑1 (MQ=255)                        tCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGt                                                                                                                       >  3:187802/1‑149 (MQ=255)                          gCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTg                                                                                                                      >  1:215744/1‑148 (MQ=255)                           cTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGaa                                                                                                                    <  7:92019/149‑1 (MQ=255)                            tGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAac                                                                                                                   <  2:247550/149‑1 (MQ=255)                              gTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGggctt                                                                                                                                   <  1:115954/131‑1 (MQ=255)                              gTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGggctt                                                                                                                                   >  2:115954/1‑131 (MQ=255)                                 aaGCGTATCACCGCGCAGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACAt                                                                                                               <  6:275662/148‑1 (MQ=255)                                  aGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATgg                                                                                                             >  4:266280/1‑149 (MQ=255)                                   gCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGt                                                                                                                       <  1:82903/138‑1 (MQ=255)                                   gCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGt                                                                                                                       >  2:82903/1‑138 (MQ=255)                                      gATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCgg                                                                                                         <  4:187802/149‑1 (MQ=255)                                        tCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGc                                                                                                        <  2:215744/148‑1 (MQ=255)                                             gcgcCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAacgac                                                                                                  <  2:104037/149‑1 (MQ=255)                                              cgcCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAacgacg                                                                                                 >  8:283750/1‑149 (MQ=255)                                                  ggtGCTGGGGAAGGTGCGACGGTAAGCTGCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGCGCGTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGt                                                                                             <  5:311788/147‑1 (MQ=255)                                                      cTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAg                                                                                          >  5:102217/1‑148 (MQ=255)                                                         gggAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATTGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCa                                                                                        <  3:104829/147‑1 (MQ=255)                                                          ggAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCCACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTg                                                                                                                      >  5:183099/1‑116 (MQ=255)                                                          ggAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCCACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTg                                                                                                                      <  6:183099/116‑1 (MQ=255)                                                                  cTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCtt                                                                              <  6:259933/148‑1 (MQ=255)                                                                  cTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCtt                                                                              >  5:259933/1‑148 (MQ=255)                                                                     cGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGc                                                                          <  1:302524/149‑1 (MQ=255)                                                                        tAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTCGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCcag                                                                       >  4:169754/1‑149 (MQ=255)                                                                            cTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCcaggtt                                                                    >  2:181469/1‑148 (MQ=255)                                                                             ttCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCcaggtt                                                                    >  2:55350/1‑147 (MQ=255)                                                                               ccGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCcaggttcag                                                                 <  1:137325/148‑1 (MQ=255)                                                                                cGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCctggttcaggt                                                               <  4:31844/149‑1 (MQ=255)                                                                                    tCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGAt                                                           >  3:281661/1‑149 (MQ=255)                                                                                      ggTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGAtc                                                          <  7:283750/148‑1 (MQ=255)                                                                                        tAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGACAGGTTCAGGTTGATCTCg                                                       <  6:270769/149‑1 (MQ=255)                                                                                          tcGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCTCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGaa                                                     <  2:183774/148‑1 (MQ=255)                                                                                            gCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGt                                                   >  5:169842/1‑149 (MQ=255)                                                                                                gTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGa                                                <  6:102217/148‑1 (MQ=255)                                                                                                      gTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACcgcg                                         >  1:69941/1‑149 (MQ=255)                                                                                                      cctcactgcgacgcgtagcgcgggcaacccgtcgacggcgcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACcgcg                                         >  1:190255‑M2/44‑149 (MQ=255)                                                                                                         cactgcgacgcgtagcgcgggcaacccgtcgacggcgcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGaa                                                     <  3:25897‑M2/94‑1 (MQ=255)                                                                                                         cactgcgacgcgtagcgcgggcaacccgtcgacggcgcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGaa                                                     >  4:25897‑M2/41‑134 (MQ=255)                                                                                                         aCCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAg                                      <  1:181469/149‑1 (MQ=255)                                                                                                          ccTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGc                                     >  3:95779/1‑149 (MQ=255)                                                                                                           CTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGc                                     <  8:94904‑M1/148‑1 (MQ=255)                                                                                                            tgcgacgcgtagcgcgggcaacccgtcgacggcgcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGc                                     >  5:14334‑M2/38‑147 (MQ=255)                                                                                                              CGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGc                                     <  2:198211‑M1/145‑1 (MQ=255)                                                                                                              CGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCga                                   >  1:55350‑M1/1‑147 (MQ=255)                                                                                                               GCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGc                                     <  1:177568‑M1/144‑1 (MQ=255)                                                                                                               GCCGTCGACGGGTCGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGAt                                >  3:169754‑M1/1‑149 (MQ=255)                                                                                                                        gggTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGGGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTgcc                       <  1:87/149‑1 (MQ=255)                                                                                                                           ttGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGACAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTgccgcc                    >  1:202790/1‑149 (MQ=255)                                                                                                                             gCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCtt                  >  7:89594/1‑149 (MQ=255)                                                                                                                                 gcgcTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGaa                                                     >  5:259995/1‑110 (MQ=255)                                                                                                                                 gcgcTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGaa                                                     <  6:259995/110‑1 (MQ=255)                                                                                                                                 gcgcTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCg                                    >  7:176343/1‑127 (MQ=255)                                                                                                                                 gcgcTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCg                                    <  8:176343/127‑1 (MQ=255)                                                                                                                                     tcgacggcgcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTg          <  2:190255‑M2/137‑1 (MQ=255)                                                                                                                                          gTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTc     <  1:198211/149‑1 (MQ=255)                                                                                                                                          gTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTc     <  6:169842/149‑1 (MQ=255)                                                                                                                                             gcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGaa  <  4:95779‑M2/145‑1 (MQ=255)                                                                                                                                             gcagTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGa   <  7:94904‑M2/144‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GCGCATACAGAGAATACTCGGTGTCGCTGGTGAAGCGGATCACCGCGCCGTTGCTTGGGAAGGTGCTACGGTAAGCTTCCGGGTCGGTAACGCTGGTGCCGGTCACCTGCGCCGTCGACGGGTTGCCCGCGCTACGCGTCGCAGTGAGGGTATCGGGCTTGGCTTCGAGGGTGAACACATGGCCGGCAACGACGGCGTCAGCATCGTCACCTTCCGCCAGGTTCAGGTTGATCTCGAAGTCGACACCGCGCAGCGAGATCATCTTGCCGCCTTCGGTATTGACGTCGAA  >  NC_002947/4972485‑4972773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.