New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5103399 =	45 (0.920)	3 (0.060)	3/256	NT	6.8%	intergenic (+13/‑376)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter
	?	NC_002947	5103457 =	38 (0.800)					intergenic (+71/‑318)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter

GGCGCATTTCTGCCTCTTTGCGTTAGGAGGCACGAGTCTGTGTGGGAGAGGGGCGGGGCAGGTGGTAGTGGGTTGTTACAACGTTGATTTTAGACGGTGTGAAAACGTGATGACGGGGGTAGCCCGCAGGTCAGCCGTTTTCACACAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5103548‑5103399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGC  >  NC_002947/5103457‑5103537                                                                                                                                                                                                                                         GGCGCATTTCTGCCTCTTTGCGTTAGGAGGCACGAGTCTGTGTGGGAGAGGGGCGGGGCAGGTGGTAGTGGGTTGTTACAACGTTGATTTTAGACGGTGTGAAAACGTGATGACGGGGGTAGCCCGCAGGTCAGCCGTTTTCACACAGT                                                                                    >  3:163289/1‑149  GCGCATTTCTGCCTCTTTGCGTTAGGAGGCACGAGTCTGTGTGGGAGAGGGGCGGGGCAGGTGGTAGTGGGTTGTTACAACGTTGATTTTAGACGGTGTGAAAACGTGATGCCGGGGGTAGCCCGCAGGTCAGCCGTTTTCACACAGTC                                                                                   >  8:212066/1‑149                                                                            TTACAACGTTGATTTTAGACGGTGTGAAAACGTGATGACGGGGGTAGCCCGCAGGTCAGCCGTTTTCACACAGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCGCCTCTCCCACACAGACTCGTGCCTCCTAAC            <  1:25519/146‑1                                                                            TTACAACGTTGATTTTAGACGGTGTGAAAACGTGATGACGGGGGTAGCCCGCAGGTCAGCCGTTTTCACACAGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAAC            >  2:25519/1‑146                                                                                    TTGATTTTAGACGGTGTGAAAACGTGATGACGGGGGTAGCCCGCAGGTCAGAAGTTTTCACACAGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACACGTGCCTCCTAACCCAAAGAGGC  >  6:84853/1‑148                                                                                                                                                                                                                                         GGCGCATTTCTGCCTCTTTGCGTTAGGAGGCACGAGTCTGTGTGGGAGAGGGGCGGGGCAGGTGGTAGTGGGTTGTTACAACGTTGATTTTAGACGGTGTGAAAACGTGATGACGGGGGTAGCCCGCAGGTCAGCCGTTTTCACACAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5103548‑5103399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGC  >  NC_002947/5103457‑5103537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.