New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5103399 =	45 (0.920)	3 (0.060)	3/256	NT	6.8%	intergenic (+13/‑376)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter
	?	NC_002947	5103457 =	38 (0.800)					intergenic (+71/‑318)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter

GACGAGATGCATGAAATCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGC  >  NC_002947/5103252‑5103547                                                                                                                                                    |                                                                                                                                                     gacgaGATGCATGAAATCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGa                                                                                                                                                     <  7:20576/149‑1 (MQ=255)     agaTGCATGAAATCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGATCCATCCGTGACCGTTCACGACGAACCGGCAGCTGCCGCCGAGCAGTATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACtgt                                                                                                                                                 <  8:277757/149‑1 (MQ=255)      gaTGCATGAAATCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCTTGACCATTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGTTGGTTACTATCAATCCAGCGCTGACCTGGAATAACTGCGCATCCCCGACtgtg                                                                                                                                                <  4:87333/149‑1 (MQ=255)                   ccGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGa                                                                                                                                   >  2:49032/1‑149 (MQ=255)                    cGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGAc                                                                                                                                  <  8:16067/149‑1 (MQ=255)                    cGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGAc                                                                                                                                  >  2:148437/1‑149 (MQ=255)                        tCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGc                                                                                                                              >  7:72459/1‑149 (MQ=255)                          ttcccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCgg                                                                                                                            >  1:13235/1‑149 (MQ=255)                            cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCgg                                                                                                                            <  5:111484/147‑1 (MQ=255)                            cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCgg                                                                                                                            <  3:251341/147‑1 (MQ=255)                            cccttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGc                                                                                                                          >  4:80999/1‑149 (MQ=255)                              cttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACtgtgt                                                                                                                                               <  1:185269/126‑1 (MQ=255)                              cttcccAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACtgtgt                                                                                                                                               >  2:185269/1‑126 (MQ=255)                                   cAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTTCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTAccccc                                                                                                                   >  2:258843/1‑149 (MQ=255)                                           aaCCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGtcatc                                                                                                             <  3:80999/147‑1 (MQ=255)                                           aaCCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCAc                                                                                                           >  5:202710/1‑149 (MQ=255)                                                    gagCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTcaca                                                                                                  >  8:26957/1‑149 (MQ=255)                                                       ccATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACtgtgtg                                                                                                                                              <  8:285877/102‑1 (MQ=255)                                                       ccATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACtgtgtg                                                                                                                                              >  7:285877/1‑102 (MQ=255)                                                        cATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGt                                                                                              >  2:274776/1‑149 (MQ=255)                                                          tCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCt                                                                                            <  7:26957/149‑1 (MQ=255)                                                                   gcctctttgggttaggaggcacgtgtctgtgtgggagaggggcggggcaggtggtagtgggttgttacaacgttgattttaGACTGTGTGAAAACTTCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCaa                                                                                    >  6:84853‑M1/82‑148 (MQ=255)                                                                   gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                   <  6:233189/149‑1 (MQ=255)                                                                        cGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGt                                                                              <  1:274776/149‑1 (MQ=255)                                                                             gttaggaggcacgagtctgtgtgggagaggggcggggcaggtggtagtgggttgttacaacgttgattttaGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTaa                                                                            >  2:25519‑M1/72‑146 (MQ=255)                                                                             gttaggaggcacgagtctgtgtgggagaggcgcggggcaggtggtagtgggttgttacaacgttgattttaGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTaa                                                                            <  1:25519‑M1/75‑1 (MQ=255)                                                                               ccGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAAcc                                                                       <  6:202710/149‑1 (MQ=255)                                                                                cGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAAccc                                                                      <  8:72459/149‑1 (MQ=255)                                                                                  gCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTa                                                                             >  2:186592/1‑140 (MQ=255)                                                                                  gCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTa                                                                             <  1:186592/140‑1 (MQ=255)                                                                                         ccgccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTaccacc                                                             >  1:40339/1‑149 (MQ=255)                                                                                         ccgccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTaccac                                                              <  4:284465/148‑1 (MQ=255)                                                                                          cgccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCt                                                            >  3:289698/1‑149 (MQ=255)                                                                                            ccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgc                                                          >  5:132398/1‑149 (MQ=255)                                                                                             cgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgcc                                                         <  6:132398/149‑1 (MQ=255)                                                                                               aGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc                                                        >  1:37104/1‑148 (MQ=255)                                                                                               aGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc                                                        <  2:37104/148‑1 (MQ=255)                                                                                                    gATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGtttt                                                                                                      <  5:291235/97‑1 (MQ=255)                                                                                                    gATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGtttt                                                                                                      >  6:291235/1‑97 (MQ=255)                                                                                                       ggTGACGATCAATCCAGCGCTGAACAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCACCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCctct                                               >  4:163289/1‑149 (MQ=255)                                                                                                            cGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcac                                          <  4:289698/149‑1 (MQ=255)                                                                                                             gATCAATGCTGAGCTGTCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACTTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcaca                                         <  8:106134/149‑1 (MQ=255)                                                                                                             gATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcaca                                         <  2:40339/149‑1 (MQ=255)                                                                                                             gATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAAAAACCCACTACCACCTGCCCCGCCCCTCTCCcaca                                         >  3:173452/1‑149 (MQ=255)                                                                                                               taaaTCCAGCGCTGAACAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcacaca                                       <  3:271084/147‑1 (MQ=255)                                                                                                                       gcgcTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGGCCCGCCCCTCTCCCACACAGACTCGTg                               >  7:212066/1‑149 (MQ=255)                                                                                                                                 ggAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACg                     <  2:13235/149‑1 (MQ=255)                                                                                                                                  gAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACg                     >  1:285933/1‑148 (MQ=255)                                                                                                                                           cgcATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCa           <  1:49032/149‑1 (MQ=255)                                                                                                                                               tCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGaaa       <  1:258843/149‑1 (MQ=255)                                                                                                                                                  ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                   <  1:273936/70‑1 (MQ=255)                                                                                                                                                  ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                   >  2:273936/1‑70 (MQ=255)                                                                                                                                                    GACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGGCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgcgc  >  8:212066‑M1/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GACGAGATGCATGAAATCCCGAATCTTCCCTTCCCAAGCCTGAACCCAGAAGAGCCATCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGC  >  NC_002947/5103252‑5103547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.