New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5103399 =	45 (0.920)	3 (0.060)	3/256	NT	6.8%	intergenic (+13/‑376)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter
	?	NC_002947	5103457 =	38 (0.800)					intergenic (+71/‑318)	PP_5694/yhhS	hypothetical protein/carbohydrate efflux transporter

TCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCCTGCTGCATTCGTCCATGT  >  NC_002947/5103309‑5103589                                                                                                                                                     |                                                                                                                                     tCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCt                                                                                                                                      <  7:26957/149‑1 (MQ=255)          gcctctttgggttaggaggcacgtgtctgtgtgggagaggggcggggcaggtggtagtgggttgttacaacgttgattttaGACTGTGTGAAAACTTCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCaa                                                                                                                              >  6:84853‑M1/82‑148 (MQ=255)          gTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                                                             <  6:233189/149‑1 (MQ=255)               cGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGt                                                                                                                        <  1:274776/149‑1 (MQ=255)                    gttaggaggcacgagtctgtgtgggagaggggcggggcaggtggtagtgggttgttacaacgttgattttaGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTaa                                                                                                                      >  2:25519‑M1/72‑146 (MQ=255)                    gttaggaggcacgagtctgtgtgggagaggcgcggggcaggtggtagtgggttgttacaacgttgattttaGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTaa                                                                                                                      <  1:25519‑M1/75‑1 (MQ=255)                      ccGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAAcc                                                                                                                 <  6:202710/149‑1 (MQ=255)                       cGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAAccc                                                                                                                <  8:72459/149‑1 (MQ=255)                         gCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTa                                                                                                                       <  1:186592/140‑1 (MQ=255)                         gCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTa                                                                                                                       >  2:186592/1‑140 (MQ=255)                                ccgccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTaccacc                                                                                                       >  1:40339/1‑149 (MQ=255)                                ccgccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTaccac                                                                                                        <  4:284465/148‑1 (MQ=255)                                 cgccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCt                                                                                                      >  3:289698/1‑149 (MQ=255)                                   ccgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgc                                                                                                    >  5:132398/1‑149 (MQ=255)                                    cgAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgcc                                                                                                   <  6:132398/149‑1 (MQ=255)                                      aGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc                                                                                                  <  2:37104/148‑1 (MQ=255)                                      aGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTgccc                                                                                                  >  1:37104/1‑148 (MQ=255)                                              ggTGACGATCAATCCAGCGCTGAACAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCACCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCctct                                                                                         >  4:163289/1‑149 (MQ=255)                                                   cGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcac                                                                                    <  4:289698/149‑1 (MQ=255)                                                    gATCAATGCTGAGCTGTCCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACTTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcaca                                                                                   <  8:106134/149‑1 (MQ=255)                                                    gATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcaca                                                                                   <  2:40339/149‑1 (MQ=255)                                                    gATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAAAAACCCACTACCACCTGCCCCGCCCCTCTCCcaca                                                                                   >  3:173452/1‑149 (MQ=255)                                                      taaaTCCAGCGCTGAACAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCcacaca                                                                                 <  3:271084/147‑1 (MQ=255)                                                              gcgcTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGGCCCGCCCCTCTCCCACACAGACTCGTg                                                                         >  7:212066/1‑149 (MQ=255)                                                                        ggAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACg                                                               <  2:13235/149‑1 (MQ=255)                                                                         gAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACg                                                               >  1:285933/1‑148 (MQ=255)                                                                          ttacaacgttgattttagacggtgtgaaaacgtgatgacgggggtagcccgcaggtcagccgttttcacacagtcTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCGCCTCTCCCACACAGACTCGTGCCTCCTAAc                                                                <  1:25519‑M2/71‑1 (MQ=255)                                                                          ttacaacgttgattttagacggtgtgaaaacgtgatgacgggggtagcccgcaggtcagccgttttcacacagtcTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAAc                                                                >  2:25519‑M2/76‑146 (MQ=255)                                                                                  ttgattttagacggtgtgaaaacgtgatgacgggggtagcccgcaggtcagaagttttcacacagtcTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACACGTGCCTCCTAACCCAAAGAGGc                                                      >  6:84853‑M2/68‑148 (MQ=255)                                                                                  cgcATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCa                                                     <  1:49032/149‑1 (MQ=255)                                                                                      tCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGaaa                                                 <  1:258843/149‑1 (MQ=255)                                                                                         ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                                                             <  1:273936/70‑1 (MQ=255)                                                                                         ccGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAAc                                                                                                                             >  2:273936/1‑70 (MQ=255)                                                                                           GACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGGCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATgcgc                                            >  8:212066‑M1/1‑149 (MQ=255)                                                                                            ACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGcc                                           >  3:163289‑M1/1‑149 (MQ=255)                                                                                                 gtgAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACACCCCACTACCACCTGCCCCGCCCCTCTCCCCCACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCg                                      >  7:204940/1‑149 (MQ=255)                                                                                                  tgAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGc                                     <  2:285933/149‑1 (MQ=255)                                                                                                      aaCGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCACaa                                 >  4:162107/1‑149 (MQ=255)                                                                                                                      ggtACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCctgc                 <  1:148437/147‑1 (MQ=255)                                                                                                                         aCCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCCTGGCTCCTAACGCAAACAGGCAGAAATGCGCCAGCCGCTCAAACGCTCGCAGCCctgatg               >  8:257514/1‑148 (MQ=255)                                                                                                                           ccccGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCCTGCTGCAt            >  5:55931/1‑149 (MQ=255)                                                                                                                                 catcaCGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCCCCCGCCGCTCAAGCGCTCGACGCCCTGCTGCATTCGTc       >  6:99036/1‑148 (MQ=255)                                                                                                                                   tcaCGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCCTGCTGCATTCGTCCAt    <  3:162107/149‑1 (MQ=255)                                                                                                                                     aCGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCCTGCTGCATTCGTCCATGt  >  7:146099/1‑149 (MQ=255)                                                                                                                                     aCGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCAAACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCAAGCCGCTCAAGAGCTCGACGCCCTGCTGCATTCGTCCATGt  >  1:240605/1‑149 (MQ=255)                                                                                                                                        ttttCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCCTGCTGCATTc          <  7:127710/138‑1 (MQ=255)                                                                                                                                        ttttCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCCTGCTGCATTc          >  8:127710/1‑138 (MQ=255)                                                                                                                                                     |                                                                                                                                     TCCGTGACCGTTCACGCCGAACCGGCAGCTGCCGCCGAGCAGGATGGTGACGATCAATCCAGCGCTGACCAGGAATAACTGCGCATCCCCGACTGTGTGAAAACGGCTGACCTGCGGGCTACCCCCGTCATCACGTTTTCACACCGTCTAAAATCAACGTTGTAACAACCCACTACCACCTGCCCCGCCCCTCTCCCACACAGACTCGTGCCTCCTAACGCAAAGAGGCAGAAATGCGCCAGCCGCTCAAGCGCTCGACGCCCTGCTGCATTCGTCCATGT  >  NC_002947/5103309‑5103589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.