| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5471251 | 50 (1.020) | 4 (0.090) | 3/248 | NT | 7.5% | coding (654/1890 nt) | mrdA‑II | transpeptidase |
| ? | NC_002947 | = 5471303 | 51 (1.100) | coding (602/1890 nt) | mrdA‑II | transpeptidase | |||||
CTGCAGCTTGATGTCCAGGCTCAGCACAATGTCCTTGCCCGGCTTCGGATCGGTGCGCTTGAGCACCCGCAACACCCGGCCACGGGCGTTGGTCTCGACTTCCTCGTAACCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5471137‑5471251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccATATCGGCAAGACCGGCATCGAGCGCTTCTACGAGGCCGCCCTGCACGGTCAGGTGGGTTACGAGGAAGTCGAGACCAACGCCCGTGGCCGGGTGTTGCGGGTGCTCAAGCGCACCGATCCGAAGCCGGGCAAGGACATTGTGCT < NC_002947/5471303‑5471159 CTGCAGCTTGATGTCCAGGCTCAGCACAATGTCCTTGCCCGGCTTCGGATCGGTGCGCTTGAGCACCCGCAACACCCGGCCACGGGCGTTGGTCTCGACTTCCTCGTAACCCACCATATCGGCAAGACCGGCATCGAGCGCTTCTAC > 4:29773/1‑147CTGCAGCTTGATGTCCAGGCTCAGCACAATGTCCTTGCCCGGCTTCGGATCGGTGCGCTTGAGCACCCGCAACACCCGGCCACGGGCGTTGGTCTCGACTTCCTCGTAACCCACCATATCGGCAAGACCGGCATCGAGCGCTTCTAC > 8:278417/1‑147 CACAATGTCCTTGCCCGGCTTCGGATCGGTGCGCTTGAGCACCCGCAACACCCGGCCACGGGCGTTGGTCTCGACTTCCTCGTAACCCACCATATCGGCAAGACCGGCATCGAGCGCTTCTACGAGGCCGCCCTGCACGGTCAGGTGGG < 3:29773/149‑1 TGTCCTTGCCCGGCTTCGGATCGGTGCGCTTGAGCACCCGCAACACCCGGCCACGGGCGTTGGTCTCGACTTCCTCGTAACCCACCATATCGGCAAGACCGGCATCGAGCGCTTCTACGAGGCCGCCCTGCACGGTCAGGTGGGTTACG < 7:278417/149‑1 CCCACCATATCGGCAAGACCGGCATCGAGCGCTTCTACGAGGCCGCCCTGCACGGTCAGGTGGGTTACGAGGAAGTCGAGACCAACGCCCGTGGCCGGGTGTTGCGGGTGCTCAAGCGCACCGATCCGAAGCCGGGCAAGGACATTGTG < 8:52254/149‑1 CACCATATCGGCAAGACCGGCATCGAGCGCTTCTACGAGGCCGCCCTGCACGGTCAGGTGGGTTACGAGGAAGTCGAGACCAACGCCCGTGGCCGGGTGTTGCGGGTGCTCAAGCGCACCGATCCGAAGCCGGGCAAGGACATTGTGCT < 1:186486/149‑1 CTGCAGCTTGATGTCCAGGCTCAGCACAATGTCCTTGCCCGGCTTCGGATCGGTGCGCTTGAGCACCCGCAACACCCGGCCACGGGCGTTGGTCTCGACTTCCTCGTAACCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5471137‑5471251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaccATATCGGCAAGACCGGCATCGAGCGCTTCTACGAGGCCGCCCTGCACGGTCAGGTGGGTTACGAGGAAGTCGAGACCAACGCCCGTGGCCGGGTGTTGCGGGTGCTCAAGCGCACCGATCCGAAGCCGGGCAAGGACATTGTGCT < NC_002947/5471303‑5471159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |