| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5574364 | 65 (1.330) | 4 (0.090) | 4/252 | NT | 5.9% | coding (930/1041 nt) | motB | flagellar motor rotation protein |
| ? | NC_002947 | = 5574393 | 64 (1.360) | coding (901/1041 nt) | motB | flagellar motor rotation protein | |||||
GTGGTGGGTGGCACAGTTGCCCACCCCCAAAAGCCGCTTACTGTTCCTTGGCTTCATCCATCTTCAGCGTGCCATCTTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5574216‑5574364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGACCCAGGGGCAACTGAACAGGCACCGATGCAACCGCGCGAGCTGCGCCAGAAGCTGAACATCTTTGAAGATGGCACGCTGAAGATGGATGAAGCCAAGGAACAGTAAGCGGC < NC_002947/5574393‑5574248 GTGGTGGGTGGCACAGTTGCCCACCCCCAAAAGCCGCTTACTGTTCCTTGGCTTCATCCATCTTCAGCGTGCCATCTTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCC > 5:64018/1‑149GTGGTGGGTGGCACAGTTGCCCACCCCCAAAAGCCGCTTACTGTTCCTTGGCTTCATCCATCTTCAGCGTGCCATCTTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCC > 8:41942/1‑149 GCTTACTGTTCCTTGGCTTCATCCATCTTCAGCGTGCCATCTTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCCAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGA < 4:18777/149‑1 ACTGTTCCTTGGCTTCATCCATCTTCAGCGTGCCATCTTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCCAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGACCC < 6:107371/148‑1 TTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCCAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGAC > 3:73794/1‑109 TTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCCAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGAC < 4:73794/109‑1 AGCCAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGACCCAGGGGCAACTGAACAGGCACCGATGCAACCGCGCGAGCTGCGCCAGAAGCTGAACATCTTTGAAGATGGCACGCTGAAGATGGATGAAGCCAAGGAACAGTAAGCGG < 8:95110/149‑1 GCCAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGACCCAGGGGCAACTGAACAGGCACCGATGCAACCGCGCGAGCTGCGCCAGAAGCTGAACATCTTTGAAGATGGCACGCTGAAGATGGATGAAGCCAAGGAACACTAAGCGGC > 3:280866/1‑149 GTGGTGGGTGGCACAGTTGCCCACCCCCAAAAGCCGCTTACTGTTCCTTGGCTTCATCCATCTTCAGCGTGCCATCTTCAAAGATGTTCAGCTTCTGGCGCAGCTCGCGCGGTTGCATCGGTGCCTGTTCAGTTGCCCCTGGGTCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5574216‑5574364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccAGTGGTGCTGCGCCAGGGGCTTCGGCACCGGCTGACCCAGGGGCAACTGAACAGGCACCGATGCAACCGCGCGAGCTGCGCCAGAAGCTGAACATCTTTGAAGATGGCACGCTGAAGATGGATGAAGCCAAGGAACAGTAAGCGGC < NC_002947/5574393‑5574248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |