New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5617601 = | 57 (1.170) | 4 (0.090) | 4/252 | NT | 6.3% | coding (1051/1176 nt) | wzy | O‑antigen polymerase |
? | NC_002947 | 5617660 = | 65 (1.380) | coding (992/1176 nt) | wzy | O‑antigen polymerase |
TGCCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5617752‑5617601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC > NC_002947/5617660‑5617806 TGCCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGAT < 2:70248/148‑1 CCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCC < 2:134081/149‑1 CCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGC < 7:189279/148‑1 CCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATC > 8:58942/1‑149 TGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCT > 8:265407/1‑148 GGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGG < 7:58942/149‑1 GCCATGCAGTTCGATGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGC < 7:265407/148‑1 GCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTC < 3:211445/148‑1 GCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCT < 5:161768/147‑1 CGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC > 2:117062/1‑149 TGCCGTTGAGATGGGCTTGCCCGGCATGTTGCTGTGGGTAATGGTGTGGCTGTTCACGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5617752‑5617601 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC > NC_002947/5617660‑5617806 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |