New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5617601 =	57 (1.170)	4 (0.090)	4/252	NT	6.3%	coding (1051/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	5617660 =	65 (1.380)					coding (992/1176 nt)	wzy	O‑antigen polymerase

GGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC  >  NC_002947/5617515‑5617806                                                                                                                                                   |                                                                                                                                                       ggCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCAGGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAAc                                                                                                                                                      <  4:271908/148‑1 (MQ=255)  gCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAg                                                                                                                                                    <  7:179027/149‑1 (MQ=255)   cACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                                                                                                   <  8:65330/149‑1 (MQ=255)   cACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                                                                                                   <  2:65020/149‑1 (MQ=255)   agatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACa                                                                                                                                                     >  8:265407‑M1/86‑148 (MQ=255)    gatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                                                                                                   >  8:58942‑M1/85‑149 (MQ=255)      gCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTg                                                                                                                                                <  7:54722/149‑1 (MQ=255)            aTGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCgg                                                                                                                                          >  2:95299/1‑149 (MQ=255)                 agcaACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGgcgcg                                                                                                                                     >  7:25723/1‑149 (MQ=255)                 agcaACATGGCAAGGCCCACCGGCAGCCAGCGGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGgcgcg                                                                                                                                     >  1:189519/1‑149 (MQ=255)                    aaCATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CAc                                                                                                                              >  5:290882/1‑149 (MQ=255)                        tGGAAAGGCAAACCGGCAGCCAGCTGATGAAACATTC‑GGCACGTGGCGTACCGGTGAGGCTTGCGGCATCGAACTGAATGGACAGGGTCGAGTAGACCCAGCAGCACAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGAtt                                                                                                                          >  8:32909/1‑149 (MQ=255)                           cAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCg                                                                                                                       <  5:166482/149‑1 (MQ=255)                            aaGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGAttt                                                                                                                         <  3:184135/146‑1 (MQ=255)                            aaGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGAttt                                                                                                                         >  4:184135/1‑146 (MQ=255)                            aaGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGc                                                                                                                      <  4:119178/149‑1 (MQ=255)                             aGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGcc                                                                                                                     <  1:223426/149‑1 (MQ=255)                                 ccACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGc                                                                                                                 >  4:220075/1‑149 (MQ=255)                                 ccACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGc                                                                                                                 >  1:204339/1‑149 (MQ=255)                                   aCCGGCAGCCAGCTGATGAACCATTCGGGCACGTGGCGTACCGGTGAGGCTGGTGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGc                                                                                                                 >  1:3483/1‑148 (MQ=255)                                   aCCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGTGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGc                                                                                                                 <  2:3483/147‑1 (MQ=255)                                        cagccagcTGAAGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACa                                                                                                          <  5:122269/149‑1 (MQ=255)                                          gccagcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGc                                                                                                        <  3:190783/149‑1 (MQ=255)                                             agcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCcac                                                                                                     <  1:36473/149‑1 (MQ=255)                                             agcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCca                                                                                                      >  4:237808/1‑148 (MQ=255)                                             agcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCca                                                                                                      >  4:177707/1‑148 (MQ=255)                                                      aCCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTAcc                                                                                            >  6:222763/1‑149 (MQ=255)                                                       ccATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGc                                                                                                        <  7:262590/136‑1 (MQ=255)                                                       ccATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGACCAGCGTGAACAGc                                                                                                        >  8:262590/1‑136 (MQ=255)                                                            c‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAg                                                                                       <  3:41846/148‑1 (MQ=255)                                                                  cGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACAt                                                                                 <  2:87417/149‑1 (MQ=255)                                                                    tGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCACAGCGTGAACACCCACACCATTACCCACAGCAACAtcc                                                                               >  8:68376/1‑147 (MQ=255)                                                                        gTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCggg                                                                           >  1:129854/1‑149 (MQ=255)                                                                           ccGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCaa                                                                        <  3:237808/149‑1 (MQ=255)                                                                              gTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGcc                                                                     >  8:44836/1‑149 (MQ=255)                                                                              gTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGcc                                                                     <  2:189519/149‑1 (MQ=255)                                                                              gTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGcc                                                                     <  2:129854/149‑1 (MQ=255)                                                                                 aGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAt                                                                  <  3:220075/149‑1 (MQ=255)                                                                                  ggCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtc                                                                 <  6:290882/149‑1 (MQ=255)                                                                                  cctgttcggcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtc                                                                 >  8:58942‑M2/66‑149 (MQ=255)                                                                                   gCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtct                                                                <  8:25723/149‑1 (MQ=255)                                                                                   gCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtct                                                                <  2:204339/149‑1 (MQ=255)                                                                                    tgttcggcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtct                                                                >  8:265407‑M2/64‑148 (MQ=255)                                                                                    cTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtctc                                                               <  7:68376/149‑1 (MQ=255)                                                                                    cTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtctc                                                               <  3:177707/149‑1 (MQ=255)                                                                                        aggcATCGAAATGCATTGCCAGGTTCGATTATACCCAGAAGCCCAGGAGTACCTTGCCTAACAGGGTGACGCGGGCGCG‑‑‑‑CACGATTTCGAACAGCTTGAACAGCAACACCATTACCCACATCAACATGCCGGGCAAGCCCATCTCAACg                                                           <  8:214151/148‑1 (MQ=255)                                                                                         GGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACgg                                                          <  2:134081‑M1/149‑1 (MQ=255)                                                                                          GCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACgg                                                          <  7:189279‑M1/148‑1 (MQ=255)                                                                                            ATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCa                                                        <  2:70248‑M1/148‑1 (MQ=255)                                                                                             tCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCCGACACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACgg                                                          <  1:95299/149‑1 (MQ=255)                                                                                                aaCTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGc                                                         <  3:61313/143‑1 (MQ=255)                                                                                                aaCTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGc                                                         >  4:61313/1‑143 (MQ=255)                                                                                                  cTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATggg                                                 >  7:288569/1‑149 (MQ=255)                                                                                                     cATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTg                                               >  5:233322/1‑148 (MQ=255)                                                                                                        ggCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACa                                           >  5:10481/1‑149 (MQ=255)                                                                                                        cttctgggTCTACTCGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCAGGGCAAGCCCATCTCAACGGCAACATGGGTGAACa                                           >  5:136242/6‑149 (MQ=255)                                                                                                              ggTCGAGTAGACCCATAAGCCCAGCAGGACCTTGCCTAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATTCCGGGCAAGCCCATCTCAACGGCAACATGGGTTAACAtgttgt                                     <  7:32909/149‑1 (MQ=255)                                                                                                                tCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAAc                                                      <  6:121602/130‑1 (MQ=255)                                                                                                                tCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAAc                                                      >  5:121602/1‑130 (MQ=255)                                                                                                                ggtctactcgaccctggccatgcagttcgatgccgAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTgg                                   <  7:58942‑M2/114‑1 (MQ=255)                                                                                                                  gAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGgt                                 <  1:134081/149‑1 (MQ=255)                                                                                                                       gACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGAt                            >  1:19530/1‑149 (MQ=255)                                                                                                                          ccAGAAGCGCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCg                          >  8:23594/1‑148 (MQ=255)                                                                                                                          ccAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAAc                                            >  2:131758/1‑130 (MQ=255)                                                                                                                          ccAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAAc                                            <  1:131758/130‑1 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGCCCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGCGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAg                       >  2:140518/1‑149 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGgt                                 <  7:284213/139‑1 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGgt                                 >  8:284213/1‑139 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGa                             >  1:65984/1‑143 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGa                             <  2:65984/143‑1 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGa                             >  1:103961/1‑143 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGa                             <  2:103961/143‑1 (MQ=255)                                                                                                                            aGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAg                       <  8:189279/149‑1 (MQ=255)                                                                                                                             gAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGt                      <  6:10481/149‑1 (MQ=255)                                                                                                                               accccAGCAGGACCTTGCCGAACAGGCTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGCACAGCCACACCCTTACCCACAGCAACAAGCCGGGCAAGCCCATCTCACCGGCAACATGGGTGAACATCTTGTGGGTGTGATCGAAGTGc                    <  2:80443/147‑1 (MQ=255)                                                                                                                                gccatgcagttcgatgccgAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGc                    <  7:265407‑M2/129‑1 (MQ=255)                                                                                                                                          aCCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGgc         <  6:233322/149‑1 (MQ=255)                                                                                                                                           ccTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGgcg        >  6:161768/1‑149 (MQ=255)                                                                                                                                            cTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACAtg                                         <  8:260972/115‑1 (MQ=255)                                                                                                                                            cTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACAtg                                         >  7:260972/1‑115 (MQ=255)                                                                                                                                               gccgAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCt      <  5:161768‑M2/143‑1 (MQ=255)                                                                                                                                               gccgAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTc     <  3:211445‑M2/144‑1 (MQ=255)                                                                                                                                                 cgAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCAcc  >  2:117062‑M2/3‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                       GGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCG‑‑‑‑CACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTCAACGGCAACATGGGTGAACATGTTGTGGGTGTGATCGAAGTGCATGCCGACGGCGCTCACC  >  NC_002947/5617515‑5617806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.