New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5617601 =	57 (1.170)	4 (0.090)	4/252	NT	6.3%	coding (1051/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	5617660 =	65 (1.380)					coding (992/1176 nt)	wzy	O‑antigen polymerase

GGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTC  >  NC_002947/5617455‑5617745                                                                                                                                                    |                                                                                                                                                 ggtgagcgccgtcggcatgcacttcgatcacacccacaacatgttcacccatgttgccgttgagatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCg                                                                                                                                                 >  2:117062‑M1/148‑149 (MQ=255)  gCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTggcgg                                                                                                                                                >  4:91048/1‑148 (MQ=255)    gagcgccgtcggcatgcacttcgatcacacccacaacatgttcacccatgttgccgttgagatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGc                                                                                                                                               <  3:211445‑M1/4‑1 (MQ=255)    cATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCAt                                                                                                                                             >  2:36473/1‑149 (MQ=255)    cATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCAt                                                                                                                                             >  2:223426/1‑149 (MQ=255)     agcgccgtcggcatgcacttcgatcacacccacaacatgttcacccatgttgccgttgagatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGc                                                                                                                                               <  5:161768‑M1/4‑1 (MQ=255)     aTTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTTATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTggcg                                                                                                                                                 <  6:266833/144‑1 (MQ=255)     aTTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTggcg                                                                                                                                                 >  5:266833/1‑144 (MQ=255)                 gCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGc                                                                                                                                >  4:35176/1‑149 (MQ=255)                   gcacttcgatcacacccacaacatgttcacccatgttgccgttgagatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGCATCGAACTGCATGGc                                                                                                                                <  7:265407‑M1/19‑1 (MQ=255)                          gTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTc                                                                                                                         >  7:65330/1‑147 (MQ=255)                          gTTGAACCGGCAATTTCACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTc                                                                                                                         >  4:211445/1‑147 (MQ=255)                               aCCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGa                                                                                                                  <  3:35682/149‑1 (MQ=255)                                  ggCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGa                                                                                                                  >  2:266117/1‑146 (MQ=255)                                  ggCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGa                                                                                                                  <  1:266117/146‑1 (MQ=255)                                  ggCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAcc                                                                                                                >  1:57995/1‑148 (MQ=255)                                  ggCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGAAGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAcc                                                                                                                >  6:122269/1‑148 (MQ=255)                                  ccacaacatgttcacccatgttgccgttgagatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAcc                                                                                                                <  7:58942‑M1/35‑1 (MQ=255)                                   gCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAccc                                                                                                               >  4:190783/1‑148 (MQ=255)                                   gCAATTTTACCACAGGAGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGAAGCCAGCAGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGAATAGAACTTCATGGCCAGGGTCGAGTAGAcc                                                                                                                >  7:214151/1‑147 (MQ=255)                                     aaTTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCAGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATgg                                                                                                                                 >  6:85600/1‑128 (MQ=255)                                     aaTTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCAGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATgg                                                                                                                                 <  5:85600/128‑1 (MQ=255)                                             cacaGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCcag                                                                                                     >  8:179027/1‑148 (MQ=255)                                               caGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACt                                                                                                                                       >  7:263867/1‑112 (MQ=255)                                               caGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACt                                                                                                                                       <  8:263867/112‑1 (MQ=255)                                                        ttttCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGcc                                                                                         >  4:41846/1‑149 (MQ=255)                                                             ggCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCAGGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAAc                                                                                     <  4:271908/148‑1 (MQ=255)                                                              gCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAg                                                                                   <  7:179027/149‑1 (MQ=255)                                                               cACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                                  <  8:65330/149‑1 (MQ=255)                                                               cACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                                  <  2:65020/149‑1 (MQ=255)                                                               agatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACa                                                                                    >  8:265407‑M1/86‑148 (MQ=255)                                                                gatgggcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                                  >  8:58942‑M1/85‑149 (MQ=255)                                                                  gCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTg                                                                               <  7:54722/149‑1 (MQ=255)                                                                        aTGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCgg                                                                         >  2:95299/1‑149 (MQ=255)                                                                             agcaACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGgcgcg                                                                    >  7:25723/1‑149 (MQ=255)                                                                             agcaACATGGCAAGGCCCACCGGCAGCCAGCGGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGgcgcg                                                                    >  1:189519/1‑149 (MQ=255)                                                                                aaCATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCAc                                                                 >  5:290882/1‑149 (MQ=255)                                                                                 aCATGGCAAGGCCCACCGGCAGCCAGCTGATGAAGCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAg                                                                                                                      <  8:86721/95‑1 (MQ=255)                                                                                 aCATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAg                                                                                                                      >  7:86721/1‑95 (MQ=255)                                                                                    tGGAAAGGCAAACCGGCAGCCAGCTGATGAAACATTC‑GGCACGTGGCGTACCGGTGAGGCTTGCGGCATCGAACTGAATGGACAGGGTCGAGTAGACCCAGCAGCACAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGAtt                                                             >  8:32909/1‑149 (MQ=255)                                                                                       cAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCg                                                          <  5:166482/149‑1 (MQ=255)                                                                                        aaGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGAttt                                                            >  4:184135/1‑146 (MQ=255)                                                                                        aaGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGAttt                                                            <  3:184135/146‑1 (MQ=255)                                                                                        aaGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGc                                                         <  4:119178/149‑1 (MQ=255)                                                                                         aGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGcc                                                        <  1:223426/149‑1 (MQ=255)                                                                                             ccACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGc                                                    >  4:220075/1‑149 (MQ=255)                                                                                             ccACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGc                                                    >  1:204339/1‑149 (MQ=255)                                                                                               aCCGGCAGCCAGCTGATGAACCATTCGGGCACGTGGCGTACCGGTGAGGCTGGTGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGc                                                    >  1:3483/1‑148 (MQ=255)                                                                                               aCCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGTGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGc                                                    <  2:3483/147‑1 (MQ=255)                                                                                                    cagccagcTGAAGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACa                                             <  5:122269/149‑1 (MQ=255)                                                                                                      gccagcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGc                                           <  3:190783/149‑1 (MQ=255)                                                                                                         agcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCcac                                        <  1:36473/149‑1 (MQ=255)                                                                                                         agcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCca                                         >  4:237808/1‑148 (MQ=255)                                                                                                         agcTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCca                                         >  4:177707/1‑148 (MQ=255)                                                                                                                  aCCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTAcc                               >  6:222763/1‑149 (MQ=255)                                                                                                                   ccATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGc                                           <  7:262590/136‑1 (MQ=255)                                                                                                                   ccATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGACCAGCGTGAACAGc                                           >  8:262590/1‑136 (MQ=255)                                                                                                                        c‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAg                          <  3:41846/148‑1 (MQ=255)                                                                                                                              cGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACAt                    <  2:87417/149‑1 (MQ=255)                                                                                                                                tGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCACAGCGTGAACACCCACACCATTACCCACAGCAACAtcc                  >  8:68376/1‑147 (MQ=255)                                                                                                                                    gTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCggg              >  1:129854/1‑149 (MQ=255)                                                                                                                                       ccGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCaa           <  3:237808/149‑1 (MQ=255)                                                                                                                                          gTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGcc        <  2:189519/149‑1 (MQ=255)                                                                                                                                          gTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGcc        <  2:129854/149‑1 (MQ=255)                                                                                                                                          gTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGcc        >  8:44836/1‑149 (MQ=255)                                                                                                                                             aGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAt     <  3:220075/149‑1 (MQ=255)                                                                                                                                              ggCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtc    <  6:290882/149‑1 (MQ=255)                                                                                                                                               gCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtct   <  2:204339/149‑1 (MQ=255)                                                                                                                                               gCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtct   <  8:25723/149‑1 (MQ=255)                                                                                                                                                cTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtctc  <  7:68376/149‑1 (MQ=255)                                                                                                                                                cTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCAtctc  <  3:177707/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTC‑GGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCCATCTC  >  NC_002947/5617455‑5617745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.