New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5624427 =	48 (0.980)	4 (0.090)	4/250	NT	8.8%	coding (204/897 nt)	PP_4942	hypothetical protein
	?	NC_002947	5624464 =	37 (0.790)					coding (167/897 nt)	PP_4942	hypothetical protein

CCAAGGCTTATGCCCAGGCGTGGGCGCGCTTTGGCGGCAGTGTTGCCACCCATCCGCTGGTGGTCGAGCAACTGGCGGACCTGGCACAGATCCCGGTGCGTTACCTGGGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5624578‑5624427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCGGAA  >  NC_002947/5624464‑5624609                                                                                                                                                                                                                                                                                                            CCAAGGCTTATGCCCAGGCGTGGGCGCGCTTTGGCGGCAGTGTTGCCACCCATCCGCTGGTGGTCGAGCAACTGGCGGACCTGGCACAGATCCCGGTGCGTTACCTGGGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCC                                                                                                                                                       >  1:167808/1‑149   AAGGCTTATGCCCAGGCGTGGGCGCGCTTTGGCGGCAGTGTTGCCACCCATCCGCTGGTGGTCGAGCAACTGGCGGACCTGGCACAGATCCCGGTGCGTTACCTGGGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCCTG                                                                                                                                                     >  2:210871/1‑149                                                                                        AGATCCCGGTGCGTTACCTGGGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCC                                                                 >  4:278968/1‑148                                                                                                          TGGGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCC                                                                                                                   >  5:244062/1‑80                                                                                                          TGGGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCC                                                                                                                   <  6:244062/80‑1                                                                                                            GGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGC                                            <  3:278968/149‑1                                                                                                                                                   GCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGCCCACCAGCGGATCGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCG     >  1:147903/1‑149                                                                                                                                                      TGGTGCCAGCCCAGGTAACTCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCCGCGGATGGGTGGCAAAACTGCCGCCAAAACGCGCCAACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGACAACCGC            >  1:247124/1‑139                                                                                                                                                      TGGTGACATCCCAGGTAACGCACCTGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGATTGCCAACCGC            <  2:247124/139‑1                                                                                                                                                        GTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCGGAA  <  6:71898/147‑1                                                                                                                                                                                                                                                                                                            CCAAGGCTTATGCCCAGGCGTGGGCGCGCTTTGGCGGCAGTGTTGCCACCCATCCGCTGGTGGTCGAGCAACTGGCGGACCTGGCACAGATCCCGGTGCGTTACCTGGGCTGGCACCAGGCTGGCGAGCTGCAAGCCGCCATCCCGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5624578‑5624427 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCGGAA  >  NC_002947/5624464‑5624609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.