New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5624427 =	48 (0.980)	4 (0.090)	4/250	NT	8.8%	coding (204/897 nt)	PP_4942	hypothetical protein
	?	NC_002947	5624464 =	37 (0.790)					coding (167/897 nt)	PP_4942	hypothetical protein

CGCAGCGGCATCAGACGCCGCCGGCAGAATGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCGGAAGGC  >  NC_002947/5624316‑5624612                                                                                                                                                     |                                                                                                                                                     cgcAGCGGCATCAGACGCCGCCGGCAGAATGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGt                                                                                                                                                      <  6:133103/149‑1 (MQ=255)        gcccaggcgtgggcgcgctttggcggcagtgttgccacccatccgctggtggtcgagcaactggcggacctggcacagatcccggtgcgttacctgggctggcaCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGcc                                                                                                                                               <  3:278968‑M1/45‑1 (MQ=255)        gCATCAGACGCCGCCGGCAGAATGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGcc                                                                                                                                               <  8:203932/149‑1 (MQ=255)               aCGCCGCCGGCAGAATGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTaa                                                                                                                                        >  1:169310/1‑149 (MQ=255)                 gccgccGGCAGAATGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACg                                                                                                                                      >  4:11688/1‑149 (MQ=255)                   cgccgGCAGAATGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCa                                                                                                                                    <  8:25217/149‑1 (MQ=255)                            aaTGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGAt                                                                                                                             <  2:260746/147‑1 (MQ=255)                            aaTGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGAt                                                                                                                             >  1:260746/1‑147 (MQ=255)                             ggcggcagtgttgccacccatccgctggtggtcgagcaactggcggacctggcacagatcccggtgcgttacctgggctggcaCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCt                                                                                                                           >  4:278968‑M1/84‑148 (MQ=255)                              tGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTACCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCtgt                                                                                                                         >  1:210871/1‑149 (MQ=255)                                 tctcGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGc                                                                                                                       >  7:92268/1‑148 (MQ=255)                                         ttACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGc                                                                                                              <  6:59779/149‑1 (MQ=255)                                           aCCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGc                                                                                                              >  2:116649/1‑147 (MQ=255)                                             cGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAg                                                                                                                                            <  6:155369/115‑1 (MQ=255)                                             cGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAg                                                                                                                                            >  5:155369/1‑115 (MQ=255)                                             cGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGt                                                                                                          >  4:127708/1‑149 (MQ=255)                                               aGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTg                                                                                                        >  6:54943/1‑149 (MQ=255)                                                  tCGAACAGGGCCTTCTTGCCAGCCCGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTc                                                                                                     >  2:167808/1‑149 (MQ=255)                                                  tCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTc                                                                                                     >  2:276087/1‑149 (MQ=255)                                                   cgcagtgggCCTTCTTGCTATGACGCTTAAGGACGTGATTGGACTGCGCCAGTTGACGCCACCATGCCGGGATTGCTGCTTGAAGCTCGACAGCCTGGTTCCAGCCCAGGTATCGATCCTGTATCTGTGCCAGGTCCGCCAGTTGCTc                                                                                                     <  4:192997/142‑1 (MQ=255)                                                        aGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGaccac                                                                                               <  4:150170/149‑1 (MQ=255)                                                          ggCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGaccac                                                                                               >  5:144573/1‑147 (MQ=255)                                                                   gCCAGCACGCTTCAGCTCGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGGAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATgg                                                                                     <  5:246090/148‑1 (MQ=255)                                                                      aGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTgg                                                                                 <  3:11688/149‑1 (MQ=255)                                                                               ggcacagatcccggtgcgttacctgggctggcaCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCa                                                                                                                                             >  5:244062‑M1/34‑80 (MQ=255)                                                                               ggcacagatcccggtgcgttacctgggctggcaCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCa                                                                                                                                             <  6:244062‑M1/47‑1 (MQ=255)                                                                                  cACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTgccgc                                                                     <  1:276087/149‑1 (MQ=255)                                                                                   aCGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTTCCAGCCCAGGTAACGCAc                                                                                                                                   <  6:287491/86‑1 (MQ=255)                                                                                    agatcccggtgcgttacctgggctggcaccaggctggcgagctgcaagccgccatcccggcctggTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTgccgcc                                                                    >  4:278968‑M2/66‑148 (MQ=255)                                                                                     gTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCt                                                                                                      <  5:305317/113‑1 (MQ=255)                                                                                     gTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCt                                                                                                      >  6:305317/1‑113 (MQ=255)                                                                                        cTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCAGATGGGTGGCAACACTGCCGCCAAAgc                                                               >  3:41631/1‑149 (MQ=255)                                                                                           ggACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAgcgcg                                                            >  4:157089/1‑149 (MQ=255)                                                                                                      tgggctggcaccaggctggcgagctgcaagccgccatcccggcctggTGCCAGCCCAGGTAACGCACCGGGATCTGTGcc                                                                                                                      >  5:244062‑M2/48‑80 (MQ=255)                                                                                                      tgggctggcaccaggctggcgagctgcaagccgccatcccggcctggTGCCAGCCCAGGTAACGCACCGGGATCTGTGcc                                                                                                                      <  6:244062‑M2/33‑1 (MQ=255)                                                                                                       gTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTggg                                                <  5:54943/149‑1 (MQ=255)                                                                                                       gTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTggg                                                >  6:166652/1‑149 (MQ=255)                                                                                                        ggctggcaccaggctggcgagctgcaagccgccatcccggcctggTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGc                                               <  3:278968‑M2/104‑1 (MQ=255)                                                                                                            gCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGCGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGc                                               >  5:81501/1‑145 (MQ=255)                                                                                                            gCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGCGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGc                                               <  6:81501/145‑1 (MQ=255)                                                                                                                 CAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCtt                                      >  2:210871‑M1/1‑149 (MQ=255)                                                                                                                   GGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTgg                                    >  1:167808‑M1/1‑149 (MQ=255)                                                                                                                          aTGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGAt                             <  3:157089/149‑1 (MQ=255)                                                                                                                          aTGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGAt                             <  7:9757/149‑1 (MQ=255)                                                                                                                                     cAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCaa                   <  2:169310/148‑1 (MQ=255)                                                                                                                                     cAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAAc                  >  7:48134/1‑149 (MQ=255)                                                                                                                                      aGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAAcc                 <  8:48134/149‑1 (MQ=255)                                                                                                                                        cTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACcgc               >  1:189837/1‑149 (MQ=255)                                                                                                                                           gCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAg                                                                                                           >  2:104060/1‑54 (MQ=255)                                                                                                                                           gCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAg                                                                                                           <  1:104060/54‑1 (MQ=255)                                                                                                                                           gCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACcgcg              <  8:92268/147‑1 (MQ=255)                                                                                                                                           gCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGtt            >  5:30626/1‑149 (MQ=255)                                                                                                                                           gCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGtt            >  8:172391/1‑149 (MQ=255)                                                                                                                                            ccAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTc           <  2:189837/149‑1 (MQ=255)                                                                                                                                               gcctggTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGCCCACCAGCGGATCGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTcgcg        >  1:147903‑M2/7‑149 (MQ=255)                                                                                                                                                  tggTGCCAGCCCAGGTAACTCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCCGCGGATGGGTGGCAAAACTGCCGCCAAAACGCGCCAACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGACAACcgc               >  1:247124‑M2/4‑139 (MQ=255)                                                                                                                                                  tggTGACATCCCAGGTAACGCACCTGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGATTGCCAACcgc               <  2:247124‑M2/136‑1 (MQ=255)                                                                                                                                                    gTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCGGaa     <  6:71898‑M2/146‑1 (MQ=255)                                                                                                                                                     tGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCGGAAGGc  <  7:172391/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CGCAGCGGCATCAGACGCCGCCGGCAGAATGATCTCGGCATTACCGAGGTCGAACAGGGCCTTCTTGCCAGCACGCTTCAGCACGTCCTTGGACAGCGCCAGGTGACGCCCCCAGGCCGGGATGGCGGCTTGCAGCTCGCCAGCCTGGTGCCAGCCCAGGTAACGCACCGGGATCTGTGCCAGGTCCGCCAGTTGCTCGACCACCAGCGGATGGGTGGCAACACTGCCGCCAAAGCGCGCCCACGCCTGGGCATAAGCCTTGGCATCGATAGCTTGCCAACCGCGTTCGCGGAAGGC  >  NC_002947/5624316‑5624612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.