New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5648364	45 (0.920)	3 (0.060)	3/254	NT	6.5%	coding (150/297 nt)	PP_4957	hypothetical protein
	?	NC_002947	= 5648394	43 (0.910)					coding (120/297 nt)	PP_4957	hypothetical protein

CCCAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5648227‑5648364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgCACAGCTCAGGACACTATCGTCGCGCTGGCCGACCTGGACA  <  NC_002947/5648394‑5648354                                                                                                                                                                                     CCCAGCACTTCGCCGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCGGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCAGCTGTTCGAACTCGCACACTATGTCCAGGTCcgc                                         >  7:90343/1‑137                               CGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGCACAGCTCAGGACACTATCGTCGCGCTGGCCGACCTGGACA  <  1:286599/149‑1                                        CACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGCACAGCTCAGGACACTATCGTCGCGCTGGCCGACCTGG     <  5:225139/137‑1                                        CACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGCACAGCTCAGGACACTATCGTCGCGCTGGCCGACCTGG     >  6:225139/1‑137                                                                                                                                                                                     CCCAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5648227‑5648364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgCACAGCTCAGGACACTATCGTCGCGCTGGCCGACCTGGACA  <  NC_002947/5648394‑5648354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.