New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5648364	45 (0.920)	3 (0.060)	3/254	NT	6.5%	coding (150/297 nt)	PP_4957	hypothetical protein
	?	NC_002947	= 5648394	43 (0.910)					coding (120/297 nt)	PP_4957	hypothetical protein

GCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCATGCTGCATGTTCCTTAGAGGTT  >  NC_002947/5648246‑5648534                                                                                                                                                     |                                                                                                                                             gCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTTGTCGAACTCGCAGACGATGTCCAGCTCGGCCAGCGCGACGATAGTGTCCTGAGCtgtg                                                                                                                                              >  5:177186/1‑149 (MQ=255)   cGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCtgtg                                                                                                                                              <  1:110168/147‑1 (MQ=255)         tGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACgggg                                                                                                                                      >  8:278123/1‑149 (MQ=255)                   tCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGTCGATAGTGTCCTGCGCTGTGCGACggg                                                                                                                                       <  7:231669/138‑1 (MQ=255)                     cACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGc                                                                                                                          <  7:278123/149‑1 (MQ=255)                      aCTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGcc                                                                                                                         <  2:13938/149‑1 (MQ=255)                       cTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCt                                                                                                                        >  3:177541/1‑149 (MQ=255)                       cTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCCGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCt                                                                                                                        <  3:269616/149‑1 (MQ=255)                                gATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAggg                                                                                                               >  2:119620/1‑149 (MQ=255)                                    gCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAgggcggg                                                                                                           <  4:177541/149‑1 (MQ=255)                                     ccccccAGTCATGGATGCGATAATGCCCGGGGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAgggcggg                                                                                                           >  1:25325/1‑148 (MQ=255)                                       ccccAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCAc                                                                                                        >  1:191539/1‑149 (MQ=255)                                           aGTCATGGATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTg                                                                                                    <  2:25325/149‑1 (MQ=255)                                                  aaTGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGGGACgg                                                                                                                                        >  4:293725/1‑106 (MQ=255)                                                  aaTGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGGGACgg                                                                                                                                        <  3:293725/106‑1 (MQ=255)                                                              cccGGCGTGGGTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCg                                                                                  <  5:271532/148‑1 (MQ=255)                                                               ccGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGAt                                                                                >  1:251994/1‑149 (MQ=255)                                                                cGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATc                                                                               <  2:191539/149‑1 (MQ=255)                                                                 ggggTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCa                                                                              <  2:251994/146‑1 (MQ=255)                                                                        tggcgtgcgCCTTCCTGCTGGTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGc                                                                       <  6:177186/147‑1 (MQ=255)                                                                           cgtgcgCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCAc                                                                    <  5:22353/149‑1 (MQ=255)                                                                               cgcCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGcc                                                                      >  7:90591/1‑143 (MQ=255)                                                                               cgcCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGcc                                                                      <  8:90591/143‑1 (MQ=255)                                                                               cgcCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTAc                                                                <  1:15490/149‑1 (MQ=255)                                                                                 ccTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAg                                                              >  1:271564/1‑149 (MQ=255)                                                                                 ccTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAg                                                              <  2:271564/149‑1 (MQ=255)                                                                                       tgctgTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGgcggcg                                                        >  7:11857/1‑149 (MQ=255)                                                                                         ctgTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGcggcgg                                                       <  3:25633/148‑1 (MQ=255)                                                                                         ctgTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGcggcgg                                                       >  1:11049/1‑148 (MQ=255)                                                                                           gTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTg                                                                                         <  7:252418/112‑1 (MQ=255)                                                                                           gTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTg                                                                                         >  8:252418/1‑112 (MQ=255)                                                                                                 aCTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAgctg                                              >  4:100370/1‑149 (MQ=255)                                                                                                  cTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAgctgc                                             >  7:135923/1‑149 (MQ=255)                                                                                                     gCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAg                                                                             <  5:101530/114‑1 (MQ=255)                                                                                                     gCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAg                                                                             >  6:101530/1‑114 (MQ=255)                                                                                                        gACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCCGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTgg                                       >  5:244068/1‑149 (MQ=255)                                                                                                          cGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTc                                     <  6:290962/149‑1 (MQ=255)                                                                                                             tGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGcgacctggacatcgtctgcgagttcgaacagcaggaaggcgcacgcaaccacgccgggcattatcgcattcatgactggggggcgatcgacaagcagtggatcatccg                                  <  1:286599‑M2/149‑109 (MQ=255)                                                                                                                ccAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGcgacctggacatcgtctgcgagttcgaacagcaggaaggcgcacgcaaccacgccgggcattatcgcattcatgactggggggcgatcgacaagcagtg                                           <  5:225139‑M2/137‑100 (MQ=255)                                                                                                                ccAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGcgacctggacatcgtctgcgagttcgaacagcaggaaggcgcacgcaaccacgccgggcattatcgcattcatgactggggggcgatcgacaagcagtg                                           >  6:225139‑M2/1‑38 (MQ=255)                                                                                                                ccAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCt                                >  2:284178/1‑148 (MQ=255)                                                                                                                     tCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTc                          >  2:107177/1‑149 (MQ=255)                                                                                                                        gCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACtt                           >  5:230091/1‑145 (MQ=255)                                                                                                                        gCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACtt                           <  6:230091/145‑1 (MQ=255)                                                                                                                            gcgcGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCAtgctg                   >  2:94209/1‑149 (MQ=255)                                                                                                                            gcgcGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCAtgctg                   <  1:284178/149‑1 (MQ=255)                                                                                                                              gcgACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCATGCTGCa                 <  1:107177/149‑1 (MQ=255)                                                                                                                                gacgaTAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCATGCTGCATg               >  3:16395/1‑149 (MQ=255)                                                                                                                                 acgaTAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCATGCTGCATGt              <  6:244068/149‑1 (MQ=255)                                                                                                                                       gtgtCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCATGCTGCATGTTCCt          >  2:248343/1‑147 (MQ=255)                                                                                                                                               cgCTGCGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCCCGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGCACAGGCGGCGGCAGAAGCTGCTCTTGGTCTTGCTCACTACCATGCTGCATGTTCCTTAGAgggt  <  8:11857/146‑3 (MQ=255)                                                                                                                                               aGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCATGCTGCATGTTCCTTAGAGGtt  <  5:124555/147‑1 (MQ=255)                                                                                                                                                   gtgCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCAtgct                    <  2:197456/125‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             GCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTCCATGCTGCATGTTCCTTAGAGGTT  >  NC_002947/5648246‑5648534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.