New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5648364	45 (0.920)	3 (0.060)	3/254	NT	6.5%	coding (150/297 nt)	PP_4957	hypothetical protein
	?	NC_002947	= 5648394	43 (0.910)					coding (120/297 nt)	PP_4957	hypothetical protein

TCAGGGGTAACCCAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTC  >  NC_002947/5648217‑5648510                                                                                                                                                    |                                                                                                                                                   tCAGGGGTAACCCAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCgg                                                                                                                                                   >  4:25633/1‑149 (MQ=255) tCAGGGGTAACCCAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCgg                                                                                                                                                   <  2:98674/149‑1 (MQ=255)           cccAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGcgac                                                                                                                                         >  6:124555/1‑149 (MQ=255)            ccAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGcgac                                                                                                                                         >  2:110168/1‑148 (MQ=255)               gCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCATGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGGCGGCCAGCGCGACGATa                                                                                                                                     <  1:304404/149‑1 (MQ=255)                   ttCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAgtgt                                                                                                                                 >  4:269616/1‑149 (MQ=255)                   ttCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAgtgt                                                                                                                                 >  6:22353/1‑149 (MQ=255)                              gCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTTGTCGAACTCGCAGACGATGTCCAGCTCGGCCAGCGCGACGATAGTGTCCTGAGCtgtg                                                                                                                      >  5:177186/1‑149 (MQ=255)                               ccGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGcgacga                                                                                                                                       <  1:223542/131‑1 (MQ=255)                               ccGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGcgacga                                                                                                                                       >  2:223542/1‑131 (MQ=255)                                cGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCtgtg                                                                                                                      <  1:110168/147‑1 (MQ=255)                                      tGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACgggg                                                                                                              >  8:278123/1‑149 (MQ=255)                                         cGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGcacagctcaggacactatcgtcgcgctggccgacctggaca                                                                                                           <  1:286599‑M1/149‑42 (MQ=255)                                                tCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGTCGATAGTGTCCTGCGCTGTGCGACggg                                                                                                               <  7:231669/138‑1 (MQ=255)                                                  cACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGcacagctcaggacactatcgtcgcgctggccgacctgg                                                                                                              <  5:225139‑M1/137‑39 (MQ=255)                                                  cACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGcacagctcaggacactatcgtcgcgctggccgacctgg                                                                                                              >  6:225139‑M1/1‑99 (MQ=255)                                                  cACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGc                                                                                                  <  7:278123/149‑1 (MQ=255)                                                   aCTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGcc                                                                                                 <  2:13938/149‑1 (MQ=255)                                                    cTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCt                                                                                                >  3:177541/1‑149 (MQ=255)                                                    cTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCCGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCt                                                                                                <  3:269616/149‑1 (MQ=255)                                                             gATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAggg                                                                                       >  2:119620/1‑149 (MQ=255)                                                                 gCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAgggcggg                                                                                   <  4:177541/149‑1 (MQ=255)                                                                  ccccccAGTCATGGATGCGATAATGCCCGGGGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAgggcggg                                                                                   >  1:25325/1‑148 (MQ=255)                                                                    ccccAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCAc                                                                                >  1:191539/1‑149 (MQ=255)                                                                        aGTCATGGATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTg                                                                            <  2:25325/149‑1 (MQ=255)                                                                               aaTGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGGGACgg                                                                                                                <  3:293725/106‑1 (MQ=255)                                                                               aaTGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGGGACgg                                                                                                                >  4:293725/1‑106 (MQ=255)                                                                                           cccGGCGTGGGTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCg                                                          <  5:271532/148‑1 (MQ=255)                                                                                            ccGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGAt                                                        >  1:251994/1‑149 (MQ=255)                                                                                             cGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATc                                                       <  2:191539/149‑1 (MQ=255)                                                                                              ggggTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCa                                                      <  2:251994/146‑1 (MQ=255)                                                                                                     tggcgtgcgCCTTCCTGCTGGTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGc                                               <  6:177186/147‑1 (MQ=255)                                                                                                        cgtgcgCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCAc                                            <  5:22353/149‑1 (MQ=255)                                                                                                            cgcCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGcc                                              >  7:90591/1‑143 (MQ=255)                                                                                                            cgcCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGcc                                              <  8:90591/143‑1 (MQ=255)                                                                                                            cgcCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTAc                                        <  1:15490/149‑1 (MQ=255)                                                                                                              ccTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAg                                      <  2:271564/149‑1 (MQ=255)                                                                                                              ccTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAg                                      >  1:271564/1‑149 (MQ=255)                                                                                                                    tgctgTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGgcggcg                                >  7:11857/1‑149 (MQ=255)                                                                                                                      ctgTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGcggcgg                               >  1:11049/1‑148 (MQ=255)                                                                                                                      ctgTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGcggcgg                               <  3:25633/148‑1 (MQ=255)                                                                                                                        gTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTg                                                                 >  8:252418/1‑112 (MQ=255)                                                                                                                        gTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTg                                                                 <  7:252418/112‑1 (MQ=255)                                                                                                                              aCTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAgctg                      >  4:100370/1‑149 (MQ=255)                                                                                                                               cTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAgctgc                     >  7:135923/1‑149 (MQ=255)                                                                                                                                  gCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAg                                                     <  5:101530/114‑1 (MQ=255)                                                                                                                                  gCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAg                                                     >  6:101530/1‑114 (MQ=255)                                                                                                                                     gACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCCGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTgg               >  5:244068/1‑149 (MQ=255)                                                                                                                                       cGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTc             <  6:290962/149‑1 (MQ=255)                                                                                                                                          tGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGcgacctggacatcgtctgcgagttcgaacagcaggaaggcgcacgcaaccacgccgggcattatcgcattcatgactggggggcgatcgacaagcagtggatcatccg          <  1:286599‑M2/149‑109 (MQ=255)                                                                                                                                             ccAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGcgacctggacatcgtctgcgagttcgaacagcaggaaggcgcacgcaaccacgccgggcattatcgcattcatgactggggggcgatcgacaagcagtg                   >  6:225139‑M2/1‑38 (MQ=255)                                                                                                                                             ccAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGcgacctggacatcgtctgcgagttcgaacagcaggaaggcgcacgcaaccacgccgggcattatcgcattcatgactggggggcgatcgacaagcagtg                   <  5:225139‑M2/137‑100 (MQ=255)                                                                                                                                             ccAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCt        >  2:284178/1‑148 (MQ=255)                                                                                                                                                  tCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTc  >  2:107177/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCAGGGGTAACCCAGCACTTCGCGGATCTGCCGCAAGTGACGGATGATCCACTGCTTGTCGATCGCCCCCCAGTCATGAATGCGATAATGCCCGGCGTGGTTGCGTGCGCCTTCCTGCTGTTCGAACTCGCAGACGATGTCCAGGTCGGCCAGCGCGACGATAGTGTCCTGAGCTGTGCGACGGGGCATGCCGGTGGCCTCCATCAGGGCGGGCACGCTGGTCGCGGTCTGGCTATCGATCAGCCAGGCCACGTACAGGCGGCGGTAGAAGCTGCTCTTGGTCTTGCTCACTTC  >  NC_002947/5648217‑5648510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.