New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5687069	47 (0.960)	3 (0.060)	3/250	NT	6.1%	coding (1897/2061 nt)	pilJ	twitching motility protein PilJ
	?	NC_002947	= 5687089	48 (1.030)					coding (1877/2061 nt)	pilJ	twitching motility protein PilJ

GTAGGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5686918‑5687069 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccAGTTGCAGACCTCGTCGGCCGGGCAGATCTCCCACACCATGGCGGTGATCCAGCAGATTACCGCGCAAACCTCTGCCGGCTCCGGTGCCACTGCCGACAGCATCCGCCACTTGGCCCGCATGGCCAGCGAGATGCGCCGTTCGG  <  NC_002947/5687089‑5686946                                                                                                                                                                                                                                                                                                          GTAGGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTG                                                                                                                                                     >  2:57842/1‑149  TAGGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGC                                                                                                                                                    <  4:99517/149‑1   AGGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATC                                                                                                                                                       <  5:252759/145‑1   AGGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATC                                                                                                                                                       >  6:252759/1‑145    GGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCGAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGATGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCC                                                                                                                                                  <  1:290300/149‑1                                  CGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGGCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCAGTTGCAGACCTCGTCGGCCGGGCAGATCT                                                                                                                    <  4:198033/149‑1                                              CTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCAGTTGCAGACCTCGTCGGCCGGGCAGATC                                                                                                                     >  7:18264/1‑136                                              CTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCAGTTGCAGACCTCGTCGGCCGGGCAGATC                                                                                                                     <  8:18264/136‑1                                                                                                                                                   CTGCCCAGTTGCAGACCTCGTCGGCCGGGCAGATCTCCCACACCATGGCGGTGATCCAGCAGATTACCGCGCAAACCTCTGCCGGCTCCGGTGCCACTGCCGACAGCATCCGCCACTTGGCCCGCATGGCCAGCGAGATGCGCCGTTCG   <  5:125029/149‑1                                                                                                                                                    TGCCCAGTTGCAGACCTCGTCGGCCGGGCAGATCTCCCACACCATGGCGGTGATCCAGCAGATTACCGCGCAAACCTCTGCCGGCTCCGGTGCCACTGCCGACAGCATCCGCCACTTGGCCCGCATGGCCAGCGAGATGCGCCGTTCGG  >  3:42561/1‑149                                                                                                                                                                                                                                                                                                          GTAGGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5686918‑5687069 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccAGTTGCAGACCTCGTCGGCCGGGCAGATCTCCCACACCATGGCGGTGATCCAGCAGATTACCGCGCAAACCTCTGCCGGCTCCGGTGCCACTGCCGACAGCATCCGCCACTTGGCCCGCATGGCCAGCGAGATGCGCCGTTCGG  <  NC_002947/5687089‑5686946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.