New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5687069	47 (0.960)	3 (0.060)	3/250	NT	6.1%	coding (1897/2061 nt)	pilJ	twitching motility protein PilJ
	?	NC_002947	= 5687089	48 (1.030)					coding (1877/2061 nt)	pilJ	twitching motility protein PilJ

GGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATGGAGATCACCGCTTCGT  >  NC_002947/5686941‑5687236                                                                                                                                                     |                                                                                                                                                      ggACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACt                                                                                                                                                       >  4:42561/1‑149 (MQ=255)      ccGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTgggca                                                                                                                                                  >  3:42561‑M2/1‑144 (MQ=255)       cGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTgggcag                                                                                                                                                 <  5:125029‑M2/149‑7 (MQ=255)        gAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGc                                                                                                                                              <  6:10909/149‑1 (MQ=255)            ggCGCAGCTCGCTGGCCATGCGGGCCAAGTGGCGGAGGCTGTCGGGAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCg                                                                                                                                          <  5:14622/149‑1 (MQ=255)                  tctcGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTCG‑‑GCAGCGTCGGAGATg                                                                                                                                    >  6:207981/1‑149 (MQ=255)                    tcGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCt                                                                                                                                  >  1:56357/1‑149 (MQ=255)                      gCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGc                                                                                                                                   <  2:60003/146‑1 (MQ=255)                      gCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCtgt                                                                                                                                <  1:290412/149‑1 (MQ=255)                          gCCATGCGGGCCAAGTGGCGGATGCTTTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTgg                                                                                                                              <  1:231419/147‑1 (MQ=255)                              tGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAgg                                                                                                                        >  7:109170/1‑149 (MQ=255)                                 gggCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCg                                                                                                                     <  2:72685/149‑1 (MQ=255)                                  ggCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCgg                                                                                                                    <  3:32271/149‑1 (MQ=255)                                    ccAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCg                                                                                                                  <  6:125029/149‑1 (MQ=255)                                       aGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAgg                                                                                                               <  2:56357/149‑1 (MQ=255)                                         tGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGtt                                                                                                             >  6:281704/1‑149 (MQ=255)                                           gCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCt                                                                                                           >  5:10025/1‑149 (MQ=255)                                                tGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGc                                                                                                         <  8:60965/146‑1 (MQ=255)                                                tGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGc                                                                                                         >  7:60965/1‑146 (MQ=255)                                                   tGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACAcc                                                                                                   >  8:31970/1‑149 (MQ=255)                                                   tGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACAcc                                                                                                   >  3:211064/1‑149 (MQ=255)                                                        gCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGCTCTGCAACAGGGAGCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCt                                                                                                >  1:99067/1‑149 (MQ=255)                                                          aGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGa                                                                                            <  8:127645/149‑1 (MQ=255)                                                            tGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGAtc                                                                                          >  8:29453/1‑149 (MQ=255)                                                            tGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGAtc                                                                                          >  8:66777/1‑149 (MQ=255)                                                                aCCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCgg                                                                                      >  2:17942/1‑149 (MQ=255)                                                                aCCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGCGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCt                                                                                                           <  5:242509/128‑1 (MQ=255)                                                                aCCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGCGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCt                                                                                                           >  6:242509/1‑128 (MQ=255)                                                                   ggAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGc                                                                                     >  1:45606/1‑147 (MQ=255)                                                                          gCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAc                                                                            >  3:286886/1‑149 (MQ=255)                                                                          gCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAc                                                                            >  1:59823/1‑149 (MQ=255)                                                                            agagGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAccc                                                                          >  6:272788/1‑149 (MQ=255)                                                                             gagGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAcccc                                                                         <  6:10025/149‑1 (MQ=255)                                                                                    gcgcGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATc                                                                   <  7:29453/148‑1 (MQ=255)                                                                                    gcgcGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATc                                                                   <  1:17942/148‑1 (MQ=255)                                                                                        ggTAATCTGCGTGATCACCGCCATGGTGTGGGAGATCTGGCCGGCGGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTggg                                                              <  5:207981/149‑1 (MQ=255)                                                                                               tgctgGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCg                                                       >  1:149657/1‑149 (MQ=255)                                                                                               tgctgGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCg                                                       >  8:89783/1‑149 (MQ=255)                                                                                                    gATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTgc                                                    <  5:272788/147‑1 (MQ=255)                                                                                                           ggcATGGTGTGGGAGCTCTGCCCGGTCTACGAGGTCTGCAACTGG‑‑GCAGCGTGGGTGTTGCTGTGGATAAGGTCGGCGTGGTTGTGCGACACCCCTTCGTTCTCGGCGTGCGCCACCCCGGCATCGTGGGCGAGGCGTGCGCCACGcac                                           <  8:81665/147‑1 (MQ=255)                                                                                                           gCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGcac                                           <  7:41537/149‑1 (MQ=255)                                                                                                              aTGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGcaccac                                        <  5:281704/149‑1 (MQ=255)                                                                                                                       gagaTCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCggt                               >  2:231125/1‑149 (MQ=255)                                                                                                                        agaTCTGCCCGGCCGACGAGGTCTGCAACTgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgccagcatccgccacttggcccgcatggccagcgagatgcgccg                                <  4:198033‑M2/149‑120 (MQ=255)                                                                                                                         gaTCTGCCCGGCCGACGAGGTCTGCAACTgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgacagcatccgccacttggcccgcatggccag                                            <  8:18264‑M2/136‑108 (MQ=255)                                                                                                                         gaTCTGCCCGGCCGACGAGGTCTGCAACTgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgacagcatccgccacttggcccgcatggccag                                            >  7:18264‑M2/1‑29 (MQ=255)                                                                                                                            cTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCt                          >  2:68199/1‑149 (MQ=255)                                                                                                                                  ggCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCCCGCACCCCTTCGGCGGTGGTCTGCTCCa                    >  3:1624/1‑149 (MQ=255)                                                                                                                                    ccGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATg                  <  7:31970/149‑1 (MQ=255)                                                                                                                                     cgacgaGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATg                  >  6:42440/1‑148 (MQ=255)                                                                                                                                      gacgaGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATGga                <  2:99067/149‑1 (MQ=255)                                                                                                                                       acgaGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATg                  >  8:5004/1‑146 (MQ=255)                                                                                                                                          aGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATGGAGATc            <  7:89783/149‑1 (MQ=255)                                                                                                                                             tCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTTGTCTGCTCCATGGAGATCAcc         <  4:286886/149‑1 (MQ=255)                                                                                                                                                gCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGCGCCAGGCGTGCGCCACGCACCACTTCGGCGGTAGTCTGCTCCATGGAGATCa           >  7:285405/1‑144 (MQ=255)                                                                                                                                                gCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGCGCCAGGCGTGCGCCACGCACCACTTCGGCGGTAGTCTGCTCCATGGAGATCa           <  8:285405/144‑1 (MQ=255)                                                                                                                                                 cAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATGGAGATCACCGCt      <  5:42440/148‑1 (MQ=255)                                                                                                                                                    cTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATGGAGATCACCGCTTCGt  <  2:45606/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCTGCTCCATGGAGATCACCGCTTCGT  >  NC_002947/5686941‑5687236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.