New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5687069	47 (0.960)	3 (0.060)	3/250	NT	6.1%	coding (1897/2061 nt)	pilJ	twitching motility protein PilJ
	?	NC_002947	= 5687089	48 (1.030)					coding (1877/2061 nt)	pilJ	twitching motility protein PilJ

GGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCT  >  NC_002947/5686921‑5687212                                                                                                                                                     |                                                                                                                                                  gggggTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCGAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGATGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCC                                                                                                                                                   <  1:290300‑M1/149‑1 (MQ=255)   gggTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCgg                                                                                                                                                 >  1:60003/1‑149 (MQ=255)    ggTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGc                                                                                                                                                <  2:175075/149‑1 (MQ=255)     gTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGcc                                                                                                                                               <  1:54023/149‑1 (MQ=255)          aGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCcgac                                                                                                                                            >  7:127645/1‑147 (MQ=255)               gAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCt                                                                                                                                     >  5:10909/1‑149 (MQ=255)                aaaCCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTg                                                                                                                                    >  1:72685/1‑149 (MQ=255)                     ggACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACt                                                                                                                               >  4:42561/1‑149 (MQ=255)                          ccGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTgggca                                                                                                                          >  3:42561‑M2/1‑144 (MQ=255)                           cGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTgggcag                                                                                                                         <  5:125029‑M2/149‑7 (MQ=255)                            gAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGc                                                                                                                      <  6:10909/149‑1 (MQ=255)                               cGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGGCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCagttgcagacctcgtcggccgggcagatct                                                                                                                     <  4:198033‑M1/149‑31 (MQ=255)                                ggCGCAGCTCGCTGGCCATGCGGGCCAAGTGGCGGAGGCTGTCGGGAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCg                                                                                                                  <  5:14622/149‑1 (MQ=255)                                      tctcGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTCG‑‑GCAGCGTCGGAGATg                                                                                                            >  6:207981/1‑149 (MQ=255)                                        tcGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCt                                                                                                          >  1:56357/1‑149 (MQ=255)                                          gCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGc                                                                                                           <  2:60003/146‑1 (MQ=255)                                          gCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCtgt                                                                                                        <  1:290412/149‑1 (MQ=255)                                           cTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCagttgcagacctcgtcggccgggcagatc                                                                                                                      >  7:18264‑M1/1‑107 (MQ=255)                                           cTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCagttgcagacctcgtcggccgggcagatc                                                                                                                      <  8:18264‑M1/136‑30 (MQ=255)                                              gCCATGCGGGCCAAGTGGCGGATGCTTTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTgg                                                                                                      <  1:231419/147‑1 (MQ=255)                                                  tGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAgg                                                                                                >  7:109170/1‑149 (MQ=255)                                                     gggCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCg                                                                                             <  2:72685/149‑1 (MQ=255)                                                      ggCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCgg                                                                                            <  3:32271/149‑1 (MQ=255)                                                        ccAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCg                                                                                          <  6:125029/149‑1 (MQ=255)                                                           aGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAgg                                                                                       <  2:56357/149‑1 (MQ=255)                                                             tGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGtt                                                                                     >  6:281704/1‑149 (MQ=255)                                                               gCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCt                                                                                   >  5:10025/1‑149 (MQ=255)                                                                    tGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGc                                                                                 <  8:60965/146‑1 (MQ=255)                                                                    tGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGc                                                                                 >  7:60965/1‑146 (MQ=255)                                                                       tGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACAcc                                                                           >  3:211064/1‑149 (MQ=255)                                                                       tGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACAcc                                                                           >  8:31970/1‑149 (MQ=255)                                                                            gCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGCTCTGCAACAGGGAGCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCt                                                                        >  1:99067/1‑149 (MQ=255)                                                                              aGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGa                                                                    <  8:127645/149‑1 (MQ=255)                                                                                tGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGAtc                                                                  >  8:29453/1‑149 (MQ=255)                                                                                tGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGAtc                                                                  >  8:66777/1‑149 (MQ=255)                                                                                    aCCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCgg                                                              >  2:17942/1‑149 (MQ=255)                                                                                    aCCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGCGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCt                                                                                   <  5:242509/128‑1 (MQ=255)                                                                                    aCCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGCGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCt                                                                                   >  6:242509/1‑128 (MQ=255)                                                                                     ccGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTg                                                                                                                                    >  2:292629/1‑80 (MQ=255)                                                                                     ccGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTg                                                                                                                                    <  1:292629/80‑1 (MQ=255)                                                                                       ggAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGc                                                             >  1:45606/1‑147 (MQ=255)                                                                                              gCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAc                                                    >  1:59823/1‑149 (MQ=255)                                                                                              gCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAc                                                    >  3:286886/1‑149 (MQ=255)                                                                                                agagGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAccc                                                  >  6:272788/1‑149 (MQ=255)                                                                                                 gagGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCAcccc                                                 <  6:10025/149‑1 (MQ=255)                                                                                                        gcgcGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATc                                           <  7:29453/148‑1 (MQ=255)                                                                                                        gcgcGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATc                                           <  1:17942/148‑1 (MQ=255)                                                                                                            ggTAATCTGCGTGATCACCGCCATGGTGTGGGAGATCTGGCCGGCGGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTggg                                      <  5:207981/149‑1 (MQ=255)                                                                                                                   tgctgGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCg                               >  1:149657/1‑149 (MQ=255)                                                                                                                   tgctgGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCg                               >  8:89783/1‑149 (MQ=255)                                                                                                                        gATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTgc                            <  5:272788/147‑1 (MQ=255)                                                                                                                               ggcATGGTGTGGGAGCTCTGCCCGGTCTACGAGGTCTGCAACTGG‑‑GCAGCGTGGGTGTTGCTGTGGATAAGGTCGGCGTGGTTGTGCGACACCCCTTCGTTCTCGGCGTGCGCCACCCCGGCATCGTGGGCGAGGCGTGCGCCACGcac                   <  8:81665/147‑1 (MQ=255)                                                                                                                               gCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGcac                   <  7:41537/149‑1 (MQ=255)                                                                                                                                  aTGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGcaccac                <  5:281704/149‑1 (MQ=255)                                                                                                                                           gagaTCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCggt       >  2:231125/1‑149 (MQ=255)                                                                                                                                            agaTCTGCCCGGCCGACGAGGTCTGCAACTgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgccagcatccgccacttggcccgcatggccagcgagatgcgccg        <  4:198033‑M2/149‑120 (MQ=255)                                                                                                                                             gaTCTGCCCGGCCGACGAGGTCTGCAACTgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgacagcatccgccacttggcccgcatggccag                    >  7:18264‑M2/1‑29 (MQ=255)                                                                                                                                             gaTCTGCCCGGCCGACGAGGTCTGCAACTgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgacagcatccgccacttggcccgcatggccag                    <  8:18264‑M2/136‑108 (MQ=255)                                                                                                                                                cTGCCCagttgcagacctcgtcggccgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgacagcatccgccacttggcccgcatggccagcgagatgcgccgttcg    <  5:125029‑M1/149‑144 (MQ=255)                                                                                                                                                cTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCt  >  2:68199/1‑149 (MQ=255)                                                                                                                                                 tGCCCagttgcagacctcgtcggccgggcagatctcccacaccatggcggtgatccagcagattaccgcgcaaacctctgccggctccggtgccactgccgacagcatccgccacttggcccgcatggccagcgagatgcgccgttcgg   >  3:42561‑M1/1‑5 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGGGGTGGCAGGGTGAAACCGGACACCGAACGGCGCATCTCGCTGGCCATGCGGGCCAAGTGGCGGATGCTGTCGGCAGTGGCACCGGAGCCGGCAGAGGTTTGCGCGGTAATCTGCTGGATCACCGCCATGGTGTGGGAGATCTGCCCGGCCGACGAGGTCTGCAACTGG‑‑GCAGCGTCGGAGATGCTGTGGATAAGGTCGGCGAGGTTCTGCGACACCCCTTCGATCTCGGCCAGCGCCACCCCGGCATCCTGGGCCAGGCGTGCGCCACGCACCACTTCGGCGGTGGTCT  >  NC_002947/5686921‑5687212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.