New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5712442	46 (0.940)	3 (0.060)	3/252	NT	6.5%	coding (511/624 nt)	PP_5012	hypothetical protein
	?	NC_002947	= 5712482	42 (0.890)					coding (551/624 nt)	PP_5012	hypothetical protein

ATATCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5712341‑5712442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcTTCAAGGCATCGAGCTCGCTGAAGGCGGCTTCGGCCTCGCGCTTGCCGACCAGGGTACGGGATTCTTCGGCCAGGTATTCGGACAGGTTCTGGCTGAAACGTGCCAGGCCTTGGCGAGTCCAGCGAGCGCGCAGGCGGATATGGCCG  <  NC_002947/5712482‑5712336                                                                                                                                                                                                                                                           ATATCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCTTCTAGGCATCGAGCTCGCTGAAGGCGGCTTCGGCCTCGCGCTTGCC                                                                                                      <  2:190096/149‑1                                                 GCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCTTCAAGGCATCGAGCTCGCTGAAGGCGGCTTCGGCCTCGCGCTTG                                                                                                        >  7:35295/1‑99                                                 GCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCTTCAAGGCATCGAGCTCGCTGAAGGCGGCTTCGGCCTCGCGCTTG                                                                                                        <  8:35295/99‑1                                                                                                     GCTTCAAGGCATCGAGCTCGCTGAAGGCGGCTTCGGCCTCGCGCTTGCCGACCAGGGTACGGGATTCTTCGGCCAGGTATTCGGACAGGTTCTGGCTGAAACGTGCCAGGCCTTGGCGAGTCCAGCGAGCGCGCAGGCGGATATGGCCG  >  2:72736/1‑149                                                                                                                                                                                                                                                           ATATCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5712341‑5712442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcTTCAAGGCATCGAGCTCGCTGAAGGCGGCTTCGGCCTCGCGCTTGCCGACCAGGGTACGGGATTCTTCGGCCAGGTATTCGGACAGGTTCTGGCTGAAACGTGCCAGGCCTTGGCGAGTCCAGCGAGCGCGCAGGCGGATATGGCCG  <  NC_002947/5712482‑5712336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.