New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5712442	46 (0.940)	3 (0.060)	3/252	NT	6.5%	coding (511/624 nt)	PP_5012	hypothetical protein
	?	NC_002947	= 5712482	42 (0.890)					coding (551/624 nt)	PP_5012	hypothetical protein

GCCGGCCATATCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTGTGGTGATCCGCTACCGCCTCGATGACCTGCTGTTC  >  NC_002947/5712334‑5712629                                                                                                                                                     |                                                                                                                                                    gccggccATATCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGaa                                                                                                                                                     <  7:10599/149‑1 (MQ=255)   cGGCCATATCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAgc                                                                                                                                                   >  2:72736‑M2/1‑147 (MQ=255)        atatCCCCCTGCGCGCTCGCTTGACTCGCCAAGGCCTGAAACCTTTCAGCCAGAACCTGTCCGAATACCAGGCCGAACAATCCCGAACCCTCGTCGTCAAGCCCGAGACCCAAGCCTCCTTCAGCGAACTCGATTCCTTGAAGCTTGa                                                                                                                                               >  8:210562/1‑148 (MQ=255)         tatCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATa                                                                                                                                             <  7:225154/149‑1 (MQ=255)          atCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATa                                                                                                                                             >  4:90398/1‑148 (MQ=255)          atCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATa                                                                                                                                             >  3:211954/1‑148 (MQ=255)          atCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGACACGTTTCAGCCAGAACCTGTCCGAATACCAGGCCGAAGAATCCCTTACCCTGGACGGCAAGCGCGAGTCCTAAGACGCCTTCAGCGAGCTCGATGCATTCAAGCTAGATa                                                                                                                                             >  3:158990/1‑148 (MQ=255)           tCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATAc                                                                                                                                            <  6:45920/148‑1 (MQ=255)           tCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACa                                                                                                                                           <  8:144895/149‑1 (MQ=255)                cTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAAc                                                                                                                                       <  4:99565/148‑1 (MQ=255)                cTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAAc                                                                                                                                       >  3:99565/1‑148 (MQ=255)                 tGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGc                                                                                                                                     >  8:153458/1‑149 (MQ=255)                            tGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAgcgcg                                                                                                                          >  2:307316/1‑149 (MQ=255)                              gACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAgcgcg                                                                                                                          <  8:252181/147‑1 (MQ=255)                               aCTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGcc                                                                                                                        >  8:33031/1‑148 (MQ=255)                                   gCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAg                                                                                                                   >  1:191688/1‑149 (MQ=255)                                    ccAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAgc                                                                                                                  <  8:233914/149‑1 (MQ=255)                                    ccAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAgc                                                                                                                  >  6:68777/1‑149 (MQ=255)                                          ccTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGt                                                                                                            <  7:181519/149‑1 (MQ=255)                                            tGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAgcgc                                                                                                                >  2:86922/1‑143 (MQ=255)                                            tGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAgcgc                                                                                                                <  1:86922/143‑1 (MQ=255)                                            tGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTcc                                                                                                          >  2:294/1‑149 (MQ=255)                                             ggCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTccc                                                                                                         >  1:128267/1‑149 (MQ=255)                                              gCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTccc                                                                                                         <  6:271412/148‑1 (MQ=255)                                                  gTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATcc                                                                                                    <  6:59026/149‑1 (MQ=255)                                                   tttCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATccc                                                                                                   <  7:153458/149‑1 (MQ=255)                                                             aaCCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAg                                                                                         >  8:117439/1‑149 (MQ=255)                                                              aCCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGc                                                                                        <  7:117439/149‑1 (MQ=255)                                                                   tCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATa                                                                                    <  4:114987/148‑1 (MQ=255)                                                                     cGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAAc                                                                                  <  5:68777/148‑1 (MQ=255)                                                                      gAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGc                                                                                <  7:33031/149‑1 (MQ=255)                                                                        aTACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCa                                                                               <  2:191688/148‑1 (MQ=255)                                                                                 cGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCATCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAgctgct                                                                     >  4:47551/1‑149 (MQ=255)                                                                                  gaagaaTCCCTTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTc                                                                    <  7:210562/149‑1 (MQ=255)                                                                                  gaagaaTCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAgctgc                                                                      >  6:254540/1‑147 (MQ=255)                                                                                  gaagaaTCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAgctgc                                                                      <  5:254540/147‑1 (MQ=255)                                                                                          ccGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATc                                                                                                     <  2:53086/108‑1 (MQ=255)                                                                                          ccGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTcc                                                             <  4:211954/148‑1 (MQ=255)                                                                                              aCCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGt                                                        >  6:103384/1‑149 (MQ=255)                                                                                                       ggCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCg                                                >  3:123063/1‑148 (MQ=255)                                                                                                       ggCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTAGAAgcttgccgaccagggtacgggattcttcggccaggtattcggacaggttctggctgaaacgtgccaggccttggcgagtccagcgagcgcgcaggcggatat                                               <  2:190096‑M2/149‑103 (MQ=255)                                                                                                         cAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAgcttgccgaccagggtacgggattcttcggccaggtattcggacaggttctggc                                                                                               >  7:35295‑M2/1‑45 (MQ=255)                                                                                                         cAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAgcttgccgaccagggtacgggattcttcggccaggtattcggacaggttctggc                                                                                               <  8:35295‑M2/99‑55 (MQ=255)                                                                                                          aaGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGAt                                                                                              <  7:97548/99‑1 (MQ=255)                                                                                                          aaGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGAt                                                                                              >  8:97548/1‑99 (MQ=255)                                                                                                            gcgcGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCa                                          <  3:90398/149‑1 (MQ=255)                                                                                                                   gCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCCCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGtgtg                                   <  6:156446/149‑1 (MQ=255)                                                                                                                    ccGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCTTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTgtgg                                  <  3:47551/149‑1 (MQ=255)                                                                                                                    ccGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTgtgg                                  <  5:103384/149‑1 (MQ=255)                                                                                                                    ccGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTgtgg                                  <  1:294/149‑1 (MQ=255)                                                                                                                     cGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTc                                                 >  2:9521/1‑133 (MQ=255)                                                                                                                     cGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTc                                                 <  1:9521/133‑1 (MQ=255)                                                                                                                                tCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTGTGGTGATCCGCTAcc                      >  1:275589/1‑149 (MQ=255)                                                                                                                                           gATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTGTGGTGATCCGCTACCGCCTCGATGAc           >  7:70034/1‑149 (MQ=255)                                                                                                                                                 ttGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTGTGGTGATCCGCTACCGCCTCGATGACctgctg     >  5:111357/1‑149 (MQ=255)                                                                                                                                                   gAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTGTGGTGATCCGCTACCGCCTCGATGACCTGCTGtt   >  1:127786/1‑149 (MQ=255)                                                                                                                                                     aGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTGTGGTGATCCGCTACCGCCTCGATGACCTGCTGTTc  >  5:211269/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCCGGCCATATCCGCCTGCGCGCTCGCTGGACTCGCCAAGGCCTGGCACGTTTCAGCCAGAACCTGTCCGAATACCTGGCCGAAGAATCCCGTACCCTGGTCGGCAAGCGCGAGGCCGAAGCCGCCTTCAGCGAGCTCGATGCCTTGAAGCTTGATACAGAACGCCTCGAAGCGCGCCTCAAGCGCCTGTCCCGATCCCTTGATACCAGCGATAACGCATGAAGCTGCTCGCCGTCCGACGTCTTTTTCGCATCCAGCGTGTGGTGATCCGCTACCGCCTCGATGACCTGCTGTTC  >  NC_002947/5712334‑5712629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.