New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 6063938 | 42 (0.860) | 4 (0.080) | 4/254 | NT | 8.4% | coding (270/891 nt) | ubiA | 4‑hydroxybenzoate octaprenyltransferase |
? | NC_002947 | = 6063958 | 46 (0.970) | coding (290/891 nt) | ubiA | 4‑hydroxybenzoate octaprenyltransferase |
GCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6063867‑6063938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcACCCGGCCGCTGGCCAAGGGGCGGTCTGCTGTGCGCTTGACGTGGCCGTCAACCTTGCGGTCGGCAAAGTCGTTGATGCAGCAGCCGGCCGCGCGCATCAGCACCACACCAAGGCCGAAGATGAGCACATTGGCCAGGGTGGGTGA < NC_002947/6063958‑6063813 GCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCACCCGGCCGCTGGCCAAGGGGCGGTCTGCTGT > 5:246994/1‑104 GCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCACCCGGCCGCTGGCCAAGGGGCGGTCTGCTGT < 6:246994/104‑1 GCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCACCCGGCCGCTGGCCAAGGGGCG > 3:57228/1‑92 GCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCACCCGGCCGCTGGCCAAGGGGCG < 4:57228/92‑1 CGCACCCGGCCGCTGGCCAAGGGGCGGTCTGCTGTGCGCTTGACGTGGCCGTCAACCTTGCGGTCGGCAAAGTCGTTGATGCAGCAGCCGGCCGCGCGCATCAGCACCACACCAAGGCCGAAGATGAGCACATTGGCCAGGGTGGGTGA < 1:298282/149‑1 GCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6063867‑6063938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcACCCGGCCGCTGGCCAAGGGGCGGTCTGCTGTGCGCTTGACGTGGCCGTCAACCTTGCGGTCGGCAAAGTCGTTGATGCAGCAGCCGGCCGCGCGCATCAGCACCACACCAAGGCCGAAGATGAGCACATTGGCCAGGGTGGGTGA < NC_002947/6063958‑6063813 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |