New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6063938	42 (0.860)	4 (0.080)	4/254	NT	8.4%	coding (270/891 nt)	ubiA	4‑hydroxybenzoate octaprenyltransferase
	?	NC_002947	= 6063958	46 (0.970)					coding (290/891 nt)	ubiA	4‑hydroxybenzoate octaprenyltransferase

TCACCCACCCTGGCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTACCCGTTCATGA  >  NC_002947/6063813‑6064092                                                                                                                                                  |                                                                                                                                        tCACCCACCCTGGCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTgcg                                                                                                                                      <  1:298282‑M2/149‑4 (MQ=255)        cccTGGCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCAcgc                                                                                                                               <  7:87912/149‑1 (MQ=255)         ccTGGCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCAcgc                                                                                                                               >  1:73016/1‑148 (MQ=255)         ccTGGCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCAcgc                                                                                                                               >  2:200733/1‑148 (MQ=255)             gCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAg                                                                                                                            <  5:256791/147‑1 (MQ=255)             gCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAg                                                                                                                            <  2:237199/147‑1 (MQ=255)                  tgtgCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGa                                                                                                                     <  1:200733/149‑1 (MQ=255)                     gCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGacac                                                                                                                  >  6:95543/1‑149 (MQ=255)                         aTCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGtt                                                                                                              >  8:14771/1‑149 (MQ=255)                            ttCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAACAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTcgc                                                                                                           >  3:147747/1‑149 (MQ=255)                                 ccTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGa                                                                                                                     >  2:182961/1‑134 (MQ=255)                                 ccTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGa                                                                                                                     <  1:182961/134‑1 (MQ=255)                                     ggtgtggtgCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGt                                                                                                  >  8:168969/1‑149 (MQ=255)                                        gtggtgCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑gg                                                                                              <  5:95543/149‑1 (MQ=255)                                           gtgCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGt                                                                                           >  7:85138/1‑149 (MQ=255)                                              cTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGa                                                                                         <  2:278201/148‑1 (MQ=255)                                               tGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑ggg                                                                                             <  7:97617/143‑1 (MQ=255)                                               tGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑ggg                                                                                             >  8:97617/1‑143 (MQ=255)                                                    cgcgcgGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGTGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTcc                                                                                   <  2:136945/148‑1 (MQ=255)                                                      cgcgGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCctgc                                                                                <  7:14771/149‑1 (MQ=255)                                                          gccggcTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGt                                                                            >  7:65255/1‑149 (MQ=255)                                                            cggcTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGc                                                                          >  1:77712/1‑149 (MQ=255)                                                             ggcTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCt                                                                         <  2:73016/149‑1 (MQ=255)                                                                     cATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCAcc                                                                  <  5:102553/148‑1 (MQ=255)                                                                        cAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCaa                                                                >  8:88538/1‑147 (MQ=255)                                                                         aaCGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAg                                                             >  6:136708/1‑149 (MQ=255)                                                                                         gCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTCGGGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCt                                              >  7:253304/1‑149 (MQ=255)                                                                                          cAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGTTGTGCACCAACAGCCGCACTGTCTGGCTGt                                            >  1:301620/1‑149 (MQ=255)                                                                                           aaGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGc                                                            >  3:146030/1‑132 (MQ=255)                                                                                           aaGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGc                                                            <  4:146030/132‑1 (MQ=255)                                                                                             ggTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGTTGTGCACCAACAGCCGCACTGTCTGGCTGTCGt                                         <  2:301620/149‑1 (MQ=255)                                                                                               ttGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTc                                       <  2:298282/149‑1 (MQ=255)                                                                                                  aCGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCgg                                     <  7:168969/148‑1 (MQ=255)                                                                                                           tCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGcc                           <  2:77712/149‑1 (MQ=255)                                                                                                             aaGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCtt                         <  8:85138/149‑1 (MQ=255)                                                                                                                cgcACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGc                      <  8:65255/149‑1 (MQ=255)                                                                                                                   acaGCAGACCGCCCCTTGGCCAGCGGCCGGGTgcggtctgctgtgcgcttgacgtggccgtcaaccttgcggtcggcaaagtcgttgatgcagcagccggccgc                                                                 <  6:246994‑M2/104‑73 (MQ=255)                                                                                                                   acaGCAGACCGCCCCTTGGCCAGCGGCCGGGTgcggtctgctgtgcgcttgacgtggccgtcaaccttgcggtcggcaaagtcgttgatgcagcagccggccgc                                                                 >  5:246994‑M2/1‑32 (MQ=255)                                                                                                                     agcagACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCt                 >  6:15984/1‑149 (MQ=255)                                                                                                                     agcagACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCt                 <  5:136708/149‑1 (MQ=255)                                                                                                                     agcagACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCt                 <  7:88538/149‑1 (MQ=255)                                                                                                                          aCCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCctgct                                                                               >  8:289313/1‑82 (MQ=255)                                                                                                                          aCCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCctgct                                                                               <  7:289313/82‑1 (MQ=255)                                                                                                                            cGCCCCTTGGCCAGCGGCCGGGTgcggtctgctgtgcgcttgacgtggccgtcaaccttgcggtcggcaaagtcgttgatgcagcagccggc                                                                    <  4:57228‑M2/92‑70 (MQ=255)                                                                                                                            cGCCCCTTGGCCAGCGGCCGGGTgcggtctgctgtgcgcttgacgtggccgtcaaccttgcggtcggcaaagtcgttgatgcagcagccggc                                                                    >  3:57228‑M2/1‑23 (MQ=255)                                                                                                                            cGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTAccc          >  1:140565/1‑149 (MQ=255)                                                                                                                            cGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTAccc          >  8:115531/1‑149 (MQ=255)                                                                                                                            cGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTAccc          >  2:6934/1‑149 (MQ=255)                                                                                                                              ccccTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTa             <  8:210297/144‑1 (MQ=255)                                                                                                                              ccccTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTa             >  7:210297/1‑144 (MQ=255)                                                                                                                                     gCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGTGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTTGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTACCCGTTCATGa  <  4:147747/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                        TCACCCACCCTGGCCAATGTGCTCATCTTCGGCCTTGGTGTGGTGCTGATGCGCGCGGCCGGCTGCTGCATCAACGACTTTGCCGACCGCAAGGTTGACGGCCACGTCAAGCGCACAGCAGACCGCCCCTTGGCCAGCGGCCGGGTGCGGCCACGCGAGGCGCTGACACTGTTCGCGATTCTGGTC‑GGGGTGAGTTTCCTGCTGGTGCTGTGCACCAACAGCCGCACTGTCTGGCTGTCGTTCGGGGCGGTGGCCTTGGCGTTCTGCTACCCGTTCATGA  >  NC_002947/6063813‑6064092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.