New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 14391048 (0.980)4 (0.090) 4/252 NT 7.7% coding (360/471 nt) PP_0136 hypothetical protein
?NC_002947 = 143966 50 (1.060)coding (416/471 nt) PP_0136 hypothetical protein

CGTTACTGAGGACGGCGACAAGTACCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACT  >  NC_002947/143766‑144057
                                                                                                                                                |                                                                                                                                                   
cGTTACTGAGGACGGCGACAAGTACCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGc                                                                                                                                                  >  1:123712/1‑148 (MQ=255)
      tGAGGACGGCGACAAGTACCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGt                                                                                                                                           >  2:284152/1‑149 (MQ=255)
        aGGACGGCGACAAGTACCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCg                                                                                                                                         >  2:139383/1‑149 (MQ=255)
          gACGGCGACAAGTACCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCTAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGcc                                                                                                                                       >  1:264143/1‑149 (MQ=255)
                   aaGTACCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCa                                                                                                                              >  4:139482/1‑149 (MQ=255)
                       aCCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATgc                                                                                                                           <  3:260403/148‑1 (MQ=255)
                                 cccGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCgct                                                                                                                <  7:278425/149‑1 (MQ=255)
                                   cGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGtcgtcaggttcgcccagccagcggtactgcgcatgacgg                                                                                                              >  7:22725‑M1/1‑110 (MQ=255)
                                       gtgCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGctggctgg                                                                                                          <  7:90326/149‑1 (MQ=255)
                                           gAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGa                                                                                                      >  5:165296/1‑149 (MQ=255)
                                                aCAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCt                                                                                                  >  3:169400/1‑148 (MQ=255)
                                                 cAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGtcgtcaggttcgcccagccagcggtactgcgcatgacgggtgggcgacttgtc                                                                                                >  3:88975‑M1/1‑96 (MQ=255)
                                                 cAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTga                                                                                                <  6:236130/149‑1 (MQ=255)
                                                  agaaCAATTGCACCTAAAAGCGGCTGATCGTGGCGTTCAGCTGTGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGATGGGCGAACCTgac                                                                                               >  6:192255/4‑149 (MQ=255)
                                                         ttGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGtcgtcaggttcgcccagccagcggtactgcgcatgacgggtgggcgacttgtcgctcggca                                                                                        <  4:88975‑M1/149‑62 (MQ=255)
                                                            cACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATg                                                                                      >  4:14496/1‑148 (MQ=255)
                                                            cACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGAAGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATg                                                                                      >  1:217093/1‑148 (MQ=255)
                                                             aCCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGtcgtcaggttcgcccagccagcggtactgcgcatgacgggtgggcgacttgtcgctcggcaaacc                                                                                    <  8:22725‑M1/149‑66 (MQ=255)
                                                             aCCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAAc                                                                                                    <  6:25239/133‑1 (MQ=255)
                                                             aCCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAAc                                                                                                    >  5:25239/1‑133 (MQ=255)
                                                             aCCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATg                                                                                      >  7:79552/1‑147 (MQ=255)
                                                             aCCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGaa                                                                                    <  3:139482/149‑1 (MQ=255)
                                                              ccTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAg                                                                                   >  4:169391/1‑149 (MQ=255)
                                                               cTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAgg                                                                                  <  1:139383/149‑1 (MQ=255)
                                                                 aCAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAAc                                                                                                    >  1:282281/1‑129 (MQ=255)
                                                                 aCAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAAc                                                                                                    <  2:282281/129‑1 (MQ=255)
                                                                    aGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCCCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAAtg                                                                             <  2:264143/149‑1 (MQ=255)
                                                                           gATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAg                                                                                   >  5:112765/1‑136 (MQ=255)
                                                                           gATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAg                                                                                   <  6:112765/136‑1 (MQ=255)
                                                                              cGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGag                                                                    <  6:165296/148‑1 (MQ=255)
                                                                               gTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGagc                                                                   <  3:169391/148‑1 (MQ=255)
                                                                                     ttCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGCCGACGGCATGAAGGCAAtgctg                                                                          >  4:243494/1‑135 (MQ=255)
                                                                                       cAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAg                                                           <  3:14496/148‑1 (MQ=255)
                                                                                        aGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCg                                                         >  6:258688/1‑149 (MQ=255)
                                                                                               aCAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTTAAGCGTGAccc                                                   >  1:260427/1‑148 (MQ=255)
                                                                                                cAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCg                                                  >  5:235623/1‑148 (MQ=255)
                                                                                                 aaGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGaa                                                >  2:308610/1‑149 (MQ=255)
                                                                                                                gggATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCAtt                                 >  6:311626/1‑149 (MQ=255)
                                                                                                                     gCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGTTACt                                        <  3:141683/137‑1 (MQ=255)
                                                                                                                     gCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACt                                        >  4:141683/1‑137 (MQ=255)
                                                                                                                     gCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATttgtt                             <  2:217093/148‑1 (MQ=255)
                                                                                                                      cTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGc                           >  7:134886/1‑149 (MQ=255)
                                                                                                                       tcgtcgAGGTGCCCGATGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGcc                          >  6:11180/1‑149 (MQ=255)
                                                                                                                       tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAAtgctgc                                                                         >  5:227289/1‑102 (MQ=255)
                                                                                                                       tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAAtgctgc                                                                         <  6:227289/102‑1 (MQ=255)
                                                                                                                       tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGcc                          >  8:85264/1‑149 (MQ=255)
                                                                                                                       tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGcc                          <  5:311626/149‑1 (MQ=255)
                                                                                                                         gtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCg                         <  7:85264/148‑1 (MQ=255)
                                                                                                                            gAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTa                      <  2:260427/148‑1 (MQ=255)
                                                                                                                                tGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGAt                 <  8:79552/149‑1 (MQ=255)
                                                                                                                                 gCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGATGCCGGTACGGAt                 >  7:221742/1‑148 (MQ=255)
                                                                                                                                 gCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGATGCCGGTACGGAt                 <  8:221742/148‑1 (MQ=255)
                                                                                                                                    cGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGa               >  5:154730/1‑147 (MQ=255)
                                                                                                                                        ggTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGAcggcaaaccttcgggcacctcgacgagcatcccgtaggcatcatccttgtcccagctgaacgccacgatcagccgcttgtaggt         <  8:22725‑M2/149‑85 (MQ=255)
                                                                                                                                            tGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGAcggcaaaccttcgggcacctcgacgagcatcccgtaggcatcatccttgtcccagctgaacgccacgatcagccgcttgtaggtgcaa     <  4:88975‑M2/149‑89 (MQ=255)
                                                                                                                                               cGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTcactcact  >  7:191523/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
CGTTACTGAGGACGGCGACAAGTACCTGGTCGGCCCGCTGTGCGAAAAACAGGACAATTGCACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACT  >  NC_002947/143766‑144057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.