New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 143910 | 48 (0.980) | 4 (0.090) | 4/252 | NT | 7.7% | coding (360/471 nt) | PP_0136 | hypothetical protein |
? | NC_002947 | = 143966 | 50 (1.060) | coding (416/471 nt) | PP_0136 | hypothetical protein |
CACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAGAAGCTGAAGCTTTCTATAGTTCAGCCTTCTATGATGCGC > NC_002947/143826‑144108 | cACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATg > 4:14496/1‑148 (MQ=255) cACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGAAGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATg > 1:217093/1‑148 (MQ=255) aCCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATg > 7:79552/1‑147 (MQ=255) aCCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGaa < 3:139482/149‑1 (MQ=255) ccTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAg > 4:169391/1‑149 (MQ=255) cTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAgg < 1:139383/149‑1 (MQ=255) aGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCCCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAAtg < 2:264143/149‑1 (MQ=255) gATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAg > 5:112765/1‑136 (MQ=255) gATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAg < 6:112765/136‑1 (MQ=255) cGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGag < 6:165296/148‑1 (MQ=255) gTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGagc < 3:169391/148‑1 (MQ=255) ttCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGCCGACGGCATGAAGGCAAtgctg > 4:243494/1‑135 (MQ=255) cAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAg < 3:14496/148‑1 (MQ=255) aGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCg > 6:258688/1‑149 (MQ=255) aCAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTTAAGCGTGAccc > 1:260427/1‑148 (MQ=255) cAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCg > 5:235623/1‑148 (MQ=255) aaGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGaa > 2:308610/1‑149 (MQ=255) gggATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCAtt > 6:311626/1‑149 (MQ=255) gCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGTTACt < 3:141683/137‑1 (MQ=255) gCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACt > 4:141683/1‑137 (MQ=255) gCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATttgtt < 2:217093/148‑1 (MQ=255) cTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGc > 7:134886/1‑149 (MQ=255) tcgtcgAGGTGCCCGATGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGcc > 6:11180/1‑149 (MQ=255) tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAAtgctgc > 5:227289/1‑102 (MQ=255) tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAAtgctgc < 6:227289/102‑1 (MQ=255) tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGcc < 5:311626/149‑1 (MQ=255) tcgtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGcc > 8:85264/1‑149 (MQ=255) gtcgAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCg < 7:85264/148‑1 (MQ=255) gAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTa < 2:260427/148‑1 (MQ=255) tGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGAt < 8:79552/149‑1 (MQ=255) gCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGATGCCGGTACGGAt > 7:221742/1‑148 (MQ=255) gCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGATGCCGGTACGGAt < 8:221742/148‑1 (MQ=255) cGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGa > 5:154730/1‑147 (MQ=255) ggTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGAcggcaaaccttcgggcacctcgacgagcatcccgtaggcatcatccttgtcccagctgaacgccacgatcagccgcttgtaggt < 8:22725‑M2/149‑85 (MQ=255) tGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGAcggcaaaccttcgggcacctcgacgagcatcccgtaggcatcatccttgtcccagctgaacgccacgatcagccgcttgtaggtgcaa < 4:88975‑M2/149‑89 (MQ=255) cGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTcactcact > 7:191523/1‑149 (MQ=255) gCGACAAGTCGCCCACCCGTCATGCGCAGTTCCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGt > 1:26569/1‑148 (MQ=255) cGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCa < 4:169400/149‑1 (MQ=255) gACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGAcggcaaaccttcgggcacctcgacgagcatcccgtaggcatcatccttgtcccagctgaacgccacgatcagccgcttgtaggtgcaattgtcctg > 3:88975‑M2/1‑53 (MQ=255) cAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGt < 5:192255/149‑1 (MQ=255) cAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGt < 6:154730/149‑1 (MQ=255) aGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTaa < 5:11180/149‑1 (MQ=255) tCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTaa > 3:2101/1‑147 (MQ=255) tCGCACACCCGTCATGCGCAGTACCGCTGGCTGGGCCAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTCAGCAATTGTTGCCGGTACGGAAGAAAGGTCACTCACTGTCACGTAATa > 5:49353/1‑149 (MQ=255) gCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTc < 5:129812/139‑1 (MQ=255) gCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTc > 6:129812/1‑139 (MQ=255) gCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAg > 1:199096/1‑148 (MQ=255) gCCCACCCGTCATGCGCAGTAACGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTAAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAg > 4:265915/1‑148 (MQ=255) aCCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAgaagct > 2:135252/1‑149 (MQ=255) cccGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAgaagctg < 8:134886/149‑1 (MQ=255) ccGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGAcggcaaaccttcgggcacctcgacgagcatcccgtaggcatcatccttgtcccagctgaacgccacgatcagccgcttgtaggtgcaattgtcctgtttttcgcacagcg > 7:22725‑M2/1‑39 (MQ=255) ccGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTcactcact > 6:264358/1‑130 (MQ=255) ccGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTcactcact < 5:264358/130‑1 (MQ=255) ccGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATG‑AAGGTCACTCACTGTCACGTAATAgaagctgaa < 5:258688/149‑1 (MQ=255) gTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGa < 2:210587/112‑1 (MQ=255) gTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAgaagctgaag > 5:306289/1‑149 (MQ=255) aTGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAgaagctgaagct < 2:50566/148‑1 (MQ=255) aGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAGAAGCTGAAGCTTTCtata < 1:284152/149‑1 (MQ=255) aGTACCGCTGGCTGGGCGAACCTGAAGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAGAAGCTGAAGCTTTCtata < 6:306289/149‑1 (MQ=255) cGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAGAAGCTGAAGCTTTCTATAGTTCa < 2:199096/149‑1 (MQ=255) cTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAGAAGCTGAAGCTTTCTATAGTTCAGCCTTCTATGATgcgc > 8:20374/1‑149 (MQ=255) | CACCTACAAGCGGCTGATCGTGGCGTTCAGCTGGGACAAGGATGATGCCTACGGGATGCTCGTCGAGGTGCCCGAAGGTTTGCCGAGCGACAAGTCGCCCACCCGTCATGCGCAGTACCGCTGGCTGGGCGAACCTGACGACGGCATGAAGGCAATGCTGCAGGAGCAGCTCAAGCGTGACCCGAACTGGTACTGAGCATTTGTTGCCGGTACGGATGAAAGGTCACTCACTGTCACGTAATAGAAGCTGAAGCTTTCTATAGTTCAGCCTTCTATGATGCGC > NC_002947/143826‑144108 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |