New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	335567 =	28 (0.570)	3 (0.060)	3/250	NT	8.7%	intergenic (‑172/+32)	PP_0277/PP_5437	hypothetical protein/hypothetical protein
	?	NC_002947	335591 =	36 (0.770)					intergenic (‑196/+8)	PP_0277/PP_5437	hypothetical protein/hypothetical protein

GTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCGGGGAAGTGGCTCACG  >  NC_002947/335420‑335713                                                                                                                                                    |                                                                                                                                                     ccagagcgacccgaaaacggtatccgtgagccacttccccgacaacagcgttacttcggcggcgcgcgtaggatacttccgaagcatccaaaccctgaagcttttgaccccatggttcagaattcccttacacagataacccggcttAc                                                                                                                                                     <  8:96009‑M1/2‑1 (MQ=255) ccagagcgacccgaaaacggtatccgtgagccacttccccgacaacagcgttacttcggcggcgcgcgtaggatacttccgaagcatccaaaccctgaagcttttgaccccatggttcagaattcccttacacagataacccggcttAc                                                                                                                                                     >  5:287224‑M1/148‑149 (MQ=255)   accttCTGGCGTTGCGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAAccc                                                                                                                                                   >  7:293585/4‑149 (MQ=255)         tGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTcc                                                                                                                                              >  7:238261/1‑148 (MQ=255)           ctgaaaacggtatccgtgagccacttccccgacaacagcgttacttcggcggcgcgcgtaggatacttccgaagcatccaaaccctgaagcttttgaccccatggttcagaattcccttacacagataacccggcttACCCGCTCCTa                                                                                                                                            <  7:177850‑M1/11‑1 (MQ=255)                                      cccgacaacagcgttacttcggcggcgcgcgtaggatacttccgaagcatccaaaccctgaagcttttgaccccatggttcagaattcccttacacagataacccggcttAccc                                                                                                                                                   >  8:127444‑M1/111‑114 (MQ=255)                                      cccgacaacagcgttacttcggcggcgcgcgtaggatacttccgaagcatccaaaccctgaagcttttgaccccatggttcagaattcccttacacagataacccggcttAccc                                                                                                                                                   <  7:127444‑M1/4‑1 (MQ=255)                                        gggCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCtgtg                                                                                                              >  7:262209/1‑149 (MQ=255)                                                      cttcggcggcgcgcgtaggatacttccgaagcatccaaaccctgaagcttttgaccccatggttcagaattcccttacacagataacccggcttACCCGc                                                                                                                                                 >  6:249356‑M1/95‑100 (MQ=255)                                                      cttcggcggcgcgcgtaggatacttccgaagcatccaaaccctgaagcttttgaccccatggttcagaattcccttacacagataacccggcttACCCGc                                                                                                                                                 <  5:249356‑M1/6‑1 (MQ=255)                                                           tttttAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGCGGGCGGGTAAGCCGGGTTATCTTTGTAAGGGAATTCTGAACGAt                                                                                           >  2:226662/1‑149 (MQ=255)                                                                 aTGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGt                                                                                      >  5:151851/1‑148 (MQ=255)                                                                                 gatgatACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑Gttt                                                                   >  6:162658/1‑149 (MQ=255)                                                                                       acacCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGc                                                             >  1:13078/1‑149 (MQ=255)                                                                                       acacCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGc                                                             >  5:15341/1‑149 (MQ=255)                                                                                           cGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCg                                                         <  5:162658/149‑1 (MQ=255)                                                                                                cGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGATTCGGAAg                                                     >  1:270109/1‑148 (MQ=255)                                                                                                     ctGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTTAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCt                                               <  1:205475/148‑1 (MQ=255)                                                                                                           cATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACGATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTAcgcgc                                         >  2:114700/1‑149 (MQ=255)                                                                                                           cATTAGCCTTGTGTTGGCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTTTCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATACTTCCGAAGCATccaaaccc                                          <  2:298414/148‑7 (MQ=38)                                                                                                                gCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGcgccgc                                    >  2:218072/1‑149 (MQ=255)                                                                                                                 ccTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCgccgcc                                   <  2:13078/149‑1 (MQ=255)                                                                                                                   ttGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGccgccg                                  >  5:274140/1‑148 (MQ=255)                                                                                                                   ttGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGccgccg                                  >  1:96905/1‑148 (MQ=255)                                                                                                                     gtgtTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGaa                                <  6:274140/148‑1 (MQ=255)                                                                                                                      tgttgtCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAg                               >  2:39689/1‑148 (MQ=255)                                                                                                                      tgttgtCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCATACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAACAAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGaa                                <  1:226662/148‑1 (MQ=255)                                                                                                                           tCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGGTGTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACg                          <  1:218072/149‑1 (MQ=255)                                                                                                                           tCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACg                          <  5:27591/148‑1 (MQ=255)                                                                                                                           tCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGc                         >  8:166620/1‑149 (MQ=255)                                                                                                                                   ggCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCg                 >  8:191054/1‑149 (MQ=255)                                                                                                                                   cacagataacccggcttACCCGCCCCCGTGTAGGAGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGaa                                                      >  1:124019‑M1/18‑112 (MQ=255)                                                                                                                                   cacagataacccggcttACCCGCCCCCGTGTAGGAGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGaa                                                      <  2:124019‑M1/95‑1 (MQ=255)                                                                                                                                    gCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCgg                >  7:26369/1‑149 (MQ=255)                                                                                                                                    acagataacccggcttACCCGCCCCCGTGTAGGAGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCgg                <  8:177850‑M1/133‑1 (MQ=255)                                                                                                                                     ccTCTTCGCGTGTGACCCCGCTCCTACACGGGGGCGGTTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCTTGGGGTCAA‑AAGATTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCggg               <  8:293585/149‑1 (MQ=255)                                                                                                                                       tctTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCGGGGa             >  7:72824/1‑149 (MQ=255)                                                                                                                                       tctTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGGCgggg              >  2:98935/1‑148 (MQ=255)                                                                                                                                           cgcgGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCGGGGAAGTg         >  3:187820/1‑149 (MQ=255)                                                                                                                                                 tGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCgg                >  1:290172/1‑136 (MQ=255)                                                                                                                                                 tGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCgg                <  2:290172/136‑1 (MQ=255)                                                                                                                                                   aaCCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCGGGGAAGTGGCTCACg  <  4:187820/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GTCGGTTCTGGCGCAACGCCAGAAGGTCGCGGGGCTGGCGGGCAGCGCGCGACGTCACTTTTTAATGATTTGGGGGGGCGGATGATACACCGTTGCGGGGGTGGAGCATTAGCCTTGTGTTGTCTGGTATGGCCTCTTCGCGGGTGAACCCGCTCCTACACGGGGGCGGGTAAGCCGGGTTATCTGTGTAAGGGAATTCTGAACCATGGGGTCAA‑AAGCTTCAGG‑GTTTGGATGCTTCGGAAGTATCCTACGCGCGCCGCCGAAGTAACGCTGTTGTCGGGGAAGTGGCTCACG  >  NC_002947/335420‑335713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.