New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	710462 =	39 (0.800)	6 (0.130)	5/252	NT	13.6%	coding (260/2832 nt)	ileS	isoleucine‑‑tRNA ligase
	?	NC_002947	710511 =	39 (0.830)					coding (309/2832 nt)	ileS	isoleucine‑‑tRNA ligase

TACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAG  >  NC_002947/710314‑710604                                                                                                                                                     |                                                                                                                                                 tACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCtt                                                                                                                                                  <  5:126384/149‑1 (MQ=255)   ccAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATCCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCg                                                                                                                                                <  7:157250/149‑1 (MQ=255)    gtatgggttgtcccagtcacccagcacgcccaggcggatgaactcggtcttctgcccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCg                                                                                                                                                >  3:51067‑M1/146‑148 (MQ=255)    cAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGa                                                                                                                                               >  3:182582/1‑149 (MQ=255)     aGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGAt                                                                                                                                              <  6:69696/149‑1 (MQ=255)         gCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATgcgc                                                                                                                                          <  3:220164/149‑1 (MQ=255)         gCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATgcgc                                                                                                                                          >  8:36492/1‑149 (MQ=255)         gCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATgcgc                                                                                                                                          <  7:284176/149‑1 (MQ=255)               cgAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACg                                                                                                                                    <  7:36492/149‑1 (MQ=255)                gAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGt                                                                                                                                   <  3:179031/149‑1 (MQ=255)                 cagtcacccagcacgcccaggcggatgaactcggtcttctgcccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTg                                                                                                                                  <  7:102400‑M1/17‑1 (MQ=255)                         aaGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTg                                                                                                                          >  2:186623/1‑149 (MQ=255)                           ggATCGTCCCAAGTTCGTCCTGCACGACGTCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTggg                                                                                                                        <  5:173802/149‑1 (MQ=255)                            gATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGa                                                                                                                       <  7:36894/149‑1 (MQ=255)                                 tCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑Gcc                                                                                                                 <  4:182582/149‑1 (MQ=255)                                   ccAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCAc                                                                                                               >  2:53915/1‑149 (MQ=255)                                    cAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACg                                                                                                              >  8:283415/1‑149 (MQ=255)                                     gcggatgaactcggtcttctgcccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATCGGCAGGCCGTGCCAGGTTGGGACT‑GCCACgg                                                                                                             >  7:221671‑M1/113‑149 (MQ=255)                                             actcggtcttctgcccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGa                                                                                                     <  1:283660‑M1/45‑1 (MQ=255)                                               tGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATc                                                                                                   >  6:87939/1‑149 (MQ=255)                                                gCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCg                                                                                                  >  5:273794/1‑149 (MQ=255)                                                  acgacgGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAg                                                                                                >  1:273870/1‑149 (MQ=255)                                                     acgGCCCGCCCTATGCCAAGGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGAGCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGcac                                                                                             <  4:136084/149‑1 (MQ=255)                                                         cccgcccTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGa                                                                                                 >  4:35421/1‑141 (MQ=255)                                                         cccgcccTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGa                                                                                                 <  3:35421/141‑1 (MQ=255)                                                          cccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACaa                                                                                           >  2:23758‑M1/92‑146 (MQ=255)                                                          cccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAg                                                                                          >  2:283660‑M1/92‑147 (MQ=255)                                                          cccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGt                                                                                        >  8:102400‑M1/92‑149 (MQ=255)                                                                     cAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAATGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACTCGCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTAc                                                                              <  1:53915/148‑1 (MQ=255)                                                                     cAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCCATCGAGCACAAGGTCGAGG‑TTAcc                                                                             >  5:146453/1‑148 (MQ=255)                                                                        cGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACg                                                                         >  6:208675/1‑149 (MQ=255)                                                                                ttCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCAc                                                                 <  5:1361/149‑1 (MQ=255)                                                                                    caTCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATAGAGCACAACGTCGCGGTTTACCAACGCCaacaccaca                                                              >  1:127091/1‑142 (MQ=255)                                                                                      tCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTcc                                                           <  7:283415/149‑1 (MQ=255)                                                                                          tCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTccgccg                                                       >  2:287259/1‑149 (MQ=255)                                                                                                             cTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCtgtg                                    <  1:186623/149‑1 (MQ=255)                                                                                                              tCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGc                                   >  8:100520/1‑149 (MQ=255)                                                                                                                aaGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCcg                                 >  8:40742/1‑149 (MQ=255)                                                                                                                  ggACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCcgc                                >  1:229453/1‑148 (MQ=255)                                                                                                                   gACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCcgc                                >  8:197214/1‑147 (MQ=255)                                                                                                                          tCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCt                       >  5:133316/1‑149 (MQ=255)                                                                                                                          tCGTCCGTTCCAAGACCCTGGCCGGCTTAGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCt                       >  2:14756/1‑149 (MQ=255)                                                                                                                             tCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGcc                    <  7:100520/149‑1 (MQ=255)                                                                                                                                    cAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGa                              <  6:251131/132‑1 (MQ=255)                                                                                                                                    cAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGa                              >  5:251131/1‑132 (MQ=255)                                                                                                                                    cAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAg                 >  6:195868/1‑145 (MQ=255)                                                                                                                                         cccTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGaa        <  5:87939/149‑1 (MQ=255)                                                                                                                                           cTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAgg      <  6:273794/149‑1 (MQ=255)                                                                                                                                              gCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAggg     >  5:222006/1‑147 (MQ=255)                                                                                                                                              gCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGc    <  5:208675/148‑1 (MQ=255)                                                                                                                                                cGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCCACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCag  >  5:200331/1‑148 (MQ=255)                                                                                                                                                  gCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCag  >  8:39291/1‑146 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TACCAGAAGCTGCGCGAAATTGGCAAGGATCGTCCCAAGTTCGTCCTGCACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAG  >  NC_002947/710314‑710604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.