New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	710462 =	39 (0.800)	6 (0.130)	5/252	NT	13.6%	coding (260/2832 nt)	ileS	isoleucine‑‑tRNA ligase
	?	NC_002947	710511 =	39 (0.830)					coding (309/2832 nt)	ileS	isoleucine‑‑tRNA ligase

ACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTGGGACAACCCATAC  >  NC_002947/710363‑710655                                                                                                                                                      |                                                                                                                                                  acgacgGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAg                                                                                                                                                   >  1:273870/1‑149 (MQ=255)    acgGCCCGCCCTATGCCAAGGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGAGCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGcac                                                                                                                                                <  4:136084/149‑1 (MQ=255)         cccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACaa                                                                                                                                              >  2:23758‑M1/92‑146 (MQ=255)         cccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAg                                                                                                                                             >  2:283660‑M1/92‑147 (MQ=255)         cccttcgatctgctcggcagcgtactcgcggcacagctcgcgggtacggtcggcggagaggtgcttgccgtgggtaacctcgaccttgtgcTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGt                                                                                                                                           >  8:102400‑M1/92‑149 (MQ=255)                    cAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAATGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACTCGCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTAc                                                                                                                                 <  1:53915/148‑1 (MQ=255)                    cAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCCATCGAGCACAAGGTCGAGG‑TTAcc                                                                                                                                >  5:146453/1‑148 (MQ=255)                       cGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACg                                                                                                                            >  6:208675/1‑149 (MQ=255)                               ttCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCAc                                                                                                                    <  5:1361/149‑1 (MQ=255)                                   caTCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATAGAGCACAACGTCGCGGTTTACCAACGCCaacaccaca                                                                                                                 >  1:127091/1‑142 (MQ=255)                                     tCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTcc                                                                                                              <  7:283415/149‑1 (MQ=255)                                         tCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTccgccg                                                                                                          >  2:287259/1‑149 (MQ=255)                                                            cTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCtgtg                                                                                       <  1:186623/149‑1 (MQ=255)                                                             tCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGc                                                                                      >  8:100520/1‑149 (MQ=255)                                                               aaGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCcg                                                                                    >  8:40742/1‑149 (MQ=255)                                                                 ggACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCcgc                                                                                   >  1:229453/1‑148 (MQ=255)                                                                  gACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCcgc                                                                                   >  8:197214/1‑147 (MQ=255)                                                                         tCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCt                                                                          >  5:133316/1‑149 (MQ=255)                                                                         tCGTCCGTTCCAAGACCCTGGCCGGCTTAGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCt                                                                          >  2:14756/1‑149 (MQ=255)                                                                            tCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGcc                                                                       <  7:100520/149‑1 (MQ=255)                                                                                   cAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGa                                                                                 >  5:251131/1‑132 (MQ=255)                                                                                   cAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGa                                                                                 <  6:251131/132‑1 (MQ=255)                                                                                   cAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAg                                                                    >  6:195868/1‑145 (MQ=255)                                                                                        cccTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGaa                                                           <  5:87939/149‑1 (MQ=255)                                                                                          cTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAgg                                                         <  6:273794/149‑1 (MQ=255)                                                                                            accttgtgctcgatcggcaggccgtggcagtcccaacctggcacgtacggcgcatcgaGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAggg                                                        >  8:102400‑M2/59‑149 (MQ=255)                                                                                             gCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAggg                                                        >  5:222006/1‑147 (MQ=255)                                                                                             gCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGc                                                       <  5:208675/148‑1 (MQ=255)                                                                                              cttgtgctcgatcggcaggccgtggcagtcccaacctggcacgtacggcgcatcgaGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAggg                                                        >  2:283660‑M2/57‑147 (MQ=255)                                                                                               ttgtgctcgatcggcaggccgtggcagtcccaacctggcacgtacggcgcatcgaGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAggg                                                        >  2:23758‑M2/56‑146 (MQ=255)                                                                                               cGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCCACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCag                                                     >  5:200331/1‑148 (MQ=255)                                                                                                 gCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCag                                                     >  8:39291/1‑146 (MQ=255)                                                                                                     CGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGAcc                                               <  5:270335‑M1/148‑1 (MQ=255)                                                                                                        TGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGt                                           <  3:150192‑M1/149‑1 (MQ=255)                                                                                                         tcggcaggccgtggcagtcccaacctggcacgtacggcgcatcgaGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGt                                           <  1:283660‑M2/104‑1 (MQ=255)                                                                                                            ccGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCAt                                       >  7:138339/1‑149 (MQ=255)                                                                                                             cGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATc                                      >  1:19005/1‑149 (MQ=255)                                                                                                             cGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATc                                      <  1:243552/149‑1 (MQ=255)                                                                                                               tACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCg                                    >  7:284676/1‑149 (MQ=255)                                                                                                                 ccgtggcagtcccaacctggcacggcctgccgatcgaGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGc                                   >  7:221671‑M2/38‑149 (MQ=255)                                                                                                                  gTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCt                                 >  2:241338/1‑149 (MQ=255)                                                                                                                         tcccaaccT‑GGCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTg                          <  5:12394/142‑1 (MQ=255)                                                                                                                             ggACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTgg                      <  6:222006/149‑1 (MQ=255)                                                                                                                             ggACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTgg                      <  2:229453/149‑1 (MQ=255)                                                                                                                             ggACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTgg                      <  7:197214/149‑1 (MQ=255)                                                                                                                             ggACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTgg                      <  2:19005/149‑1 (MQ=255)                                                                                                                              gACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTggg                     <  1:14756/149‑1 (MQ=255)                                                                                                                               aCT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGt                    <  1:287259/149‑1 (MQ=255)                                                                                                                                     cacgtacggcgcatcgaGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTg               <  7:102400‑M2/132‑1 (MQ=255)                                                                                                                                     cACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTg               >  7:92749/1‑149 (MQ=255)                                                                                                                                      aCGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTgg              >  8:183995/1‑149 (MQ=255)                                                                                                                                      aCGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTgg              <  6:133316/149‑1 (MQ=255)                                                                                                                                               cGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTGGGACAACCCa     <  5:195868/149‑1 (MQ=255)                                                                                                                                                   cgaGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTGGGACAACCCATAc  >  3:51067‑M2/4‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                                  ACGACGGCCCGCCCTATGCCAACGGCAAGATTCACATCGGTCATGCGCTGAACAAGATCCTCAAGGACATGATCGTCCGTTCCAAGACCCTGGCCGGCTTCGATGCGCCGTACGTGCCAGGTTGGGACT‑GCCACGGCCTGCCGATCGAGCACAAGGTCGAGG‑TTACCCACGGCAAGCACCTCTCCGCCGACCGTACCCGCGAGCTGTGCCGCGAGTACGCTGCCGAGCAGATCGAAGGGCAGAAGACCGAGTTCATCCGCCTGGGCGTGCTGGGTGACTGGGACAACCCATAC  >  NC_002947/710363‑710655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.