New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	722076 =	46 (0.940)	4 (0.090)	4/250	NT	9.4%	coding (674/753 nt)	PP_0616	ABC transporter ATP‑binding protein
	?	NC_002947	722166 =	33 (0.710)					coding (584/753 nt)	PP_0616	ABC transporter ATP‑binding protein

TTGAGCGAGACGCCTTCGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCAT  >  NC_002947/721930‑722212                                                                                                                                                   |                                                                                                                                          gcgggcgaactgtcgcacggccagcaaagggtgctggaagtgggcatgtcgatctgtgccaagcccaccctgctgatgcttgacgaacccacttcgggcatgggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTgg                                                                                                                                         <  3:75082‑M1/3‑1 (MQ=255) gcgggcgaactgtcgcacggccagcaaagggtgctggaagtgggcatgtcgatctgtgccaagcccaccctgctgatgcttgacgaacccacttcgggcatgggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTg                                                                                                                                          >  8:179705‑M1/147‑148 (MQ=255)   gAGCGAGACGCCTTCGAGCACATGGCTGTTGTGGTAGTTGGAATGGGTCGAATCGACGGTGAGCATAAGGCGGCCGCTCCCAGGTAGGCGGTGCGTACGCGCGCGTCGGTGCGCACCTGTTCAGGGGTTCCCTCGACCACGATCTGGcc                                                                                                                                       >  6:295555/1‑149 (MQ=255)    aGCGAGACGCCTTCGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCg                                                                                                                                      <  2:20685/149‑1 (MQ=255)       gagaCGCCTTCGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGa                                                                                                                                   <  6:14385/149‑1 (MQ=255)            gCCTTCGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACtcat                                                                                                                              <  3:79270/149‑1 (MQ=255)            gCCTTCGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACtca                                                                                                                               >  8:69982/1‑148 (MQ=255)              cTTCGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGAGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCAACGACCAGGATCTGGCCGTGACtcatca                                                                                                                            >  8:60001/1‑149 (MQ=255)                 cGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCAc                                                                                                                           <  7:20939/147‑1 (MQ=255)                     cacaTGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGAt                                                                                                                     <  5:295555/149‑1 (MQ=255)                         caaagggtgctggaagtgggcatgtcgatctgtgccaagcccaccctgctgatgcttgacgaacccacttcgggcatgggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTGGCCGTGACTCATCACCGTGATgcgc                                                                                                                 <  1:50822‑M1/27‑1 (MQ=255)                           gCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCgct                                                                                                                <  4:228737/148‑1 (MQ=255)                            ctctTGTCGTAGTAGTAATGGATCGAATCGACGTTGATCATCAGGCGTCCTCTCCAAGGTATGCTGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACGCTCGACCAGGATCTGGCCGTGACTCATCACCGtta                                                                                                                      <  7:256041/141‑3 (MQ=255)                            ctctTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGa                                                                                                                                   <  5:3551/128‑1 (MQ=255)                            ctctTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGa                                                                                                                                   >  6:3551/1‑128 (MQ=255)                            ctctTGTAGTAGTAGGAATGGATCGAATCGACGTTTAGCATCAGGCGGCCTCTCAAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCATCGACCACGATCTGGCCGAGACTCATCACCGTGAtagatcg                                                                                                               >  8:256041/1‑142 (MQ=255)                              ctTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCgctggct                                                                                                            >  5:7876/1‑149 (MQ=255)                                    gtagtaGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGa                                                                                                      >  1:196423/1‑149 (MQ=255)                                    gtagtaGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGa                                                                                                      >  5:303943/1‑149 (MQ=255)                                     tagtagGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGa                                                                                                      >  5:53564/1‑148 (MQ=255)                                           gAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGAc                                                                                                >  6:68703/1‑148 (MQ=255)                                                gATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGc                                                                                           <  3:236697/148‑1 (MQ=255)                                                gATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGc                                                                                           >  4:236697/1‑148 (MQ=255)                                                 atcgaatcgaCGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTc                                                                                         <  5:119016/149‑1 (MQ=255)                                                      atcgaCGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCAtgtt                                                                                    <  5:33296/149‑1 (MQ=255)                                                                aGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGAt                                                                          <  2:196423/148‑1 (MQ=255)                                                                aGCATCACGCGGCCTCTCCACGGTAGGCGGTGCGTACGCGGTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGAGCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGAt                                                                          <  6:242962/148‑1 (MQ=255)                                                                   aTCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAg                                                                       >  5:139497/1‑148 (MQ=255)                                                                     cAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAg                                                                    >  1:116636/1‑149 (MQ=255)                                                                      aGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAg                                                                    >  1:126815/1‑148 (MQ=255)                                                                        gcggcCTCACCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCa                                                                        <  6:10588/142‑1 (MQ=255)                                                                        gcggcCTCACCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCa                                                                        >  5:10588/1‑142 (MQ=255)                                                                          ggcCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGa                                                                                                                      <  8:25288/95‑1 (MQ=255)                                                                          ggcCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGa                                                                                                                      >  7:25288/1‑95 (MQ=255)                                                                           gcCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGt                                                              <  6:303943/149‑1 (MQ=255)                                                                             ctctCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTAt                                                            >  2:295331/1‑149 (MQ=255)                                                                             ctctCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTAt                                                            >  3:13521/1‑149 (MQ=255)                                                                              tctcCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATg                                                           >  7:275579/1‑149 (MQ=255)                                                                                  cAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGt                                                         <  5:68703/147‑1 (MQ=255)                                                                                   aaGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTcgc                                                      <  6:51501/149‑1 (MQ=255)                                                                                     ggTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCgg                                                    <  6:53564/149‑1 (MQ=255)                                                                                          cacttcgggcatgggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAg                                               >  2:50822‑M1/58‑149 (MQ=255)                                                                                                cGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGc                                          <  6:7876/148‑1 (MQ=255)                                                                                                      gggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCg                                           >  6:282137‑M1/46‑141 (MQ=255)                                                                                                      gggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCg                                           <  5:282137‑M1/96‑1 (MQ=255)                                                                                                       gcTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCAtgtt‑gt                                                                                 >  5:297710/1‑102 (MQ=255)                                                                                                       gcTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCAtgtt‑gt                                                                                 <  6:297710/102‑1 (MQ=255)                                                                                                                     aCCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCgg                    <  7:69982/149‑1 (MQ=255)                                                                                                                     aCCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCgg                    <  4:13521/149‑1 (MQ=255)                                                                                                                      ccTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCggg                   <  2:116636/149‑1 (MQ=255)                                                                                                                              ggggTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTTCGTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATc                                     <  1:222316/124‑1 (MQ=255)                                                                                                                              ggggTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATc                                     >  2:222316/1‑123 (MQ=255)                                                                                                                                       tCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCATCGatgcccat  >  5:7179/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                          TTGAGCGAGACGCCTTCGAGCACATGGCTCTTGTCGTAGTAGGAATGGATCGAATCGACGTTGAGCATCAGGCGGCCTCTCCAAGGTAGGCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCAT  >  NC_002947/721930‑722212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.