New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	722076 =	46 (0.940)	4 (0.090)	4/250	NT	9.4%	coding (674/753 nt)	PP_0616	ABC transporter ATP‑binding protein
	?	NC_002947	722166 =	33 (0.710)					coding (584/753 nt)	PP_0616	ABC transporter ATP‑binding protein

GCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGTTCGCCCGC  >  NC_002947/722019‑722311                                                                                                                                                     |                                                                                                                                                  cacttcgggcatgggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAg                                                                                                                                                  >  2:50822‑M1/58‑149 (MQ=255)       cGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGc                                                                                                                                             <  6:7876/148‑1 (MQ=255)             gggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCg                                                                                                                                              <  5:282137‑M1/96‑1 (MQ=255)             gggcatcgacgacatcccggtgatgaccgacctgatcagcgacctTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCg                                                                                                                                              >  6:282137‑M1/46‑141 (MQ=255)                            aCCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCgg                                                                                                                       <  7:69982/149‑1 (MQ=255)                            aCCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCgg                                                                                                                       <  4:13521/149‑1 (MQ=255)                             ccTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCggg                                                                                                                      <  2:116636/149‑1 (MQ=255)                                     ggggTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTTCGTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATc                                                                                                                                        <  1:222316/124‑1 (MQ=255)                                     ggggTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATc                                                                                                                                        >  2:222316/1‑123 (MQ=255)                                              tCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCATCGatgcccat                                                                                                     >  5:7179/1‑149 (MQ=255)                                                     cgaccttggccgcgaccataccgtgctactgatcgagcacaacatgagcattgtcatgtcgatcagccagcgcatcacggtgatgagtcacggccaAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGatgccc                                                                                                       <  5:282137‑M2/45‑1 (MQ=255)                                                     cgaccttggccgcgaccataccgtgctactgatcgagcacaacatgagcattgtcatgtcgatcagccagcgcatcacggtgatgagtcacggccaAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGatgccc                                                                                                       >  6:282137‑M2/97‑141 (MQ=255)                                                         cttggccgcgaccataccgtgctactgatcgagcacaacatgagcattgtcatgtcgatcagccagcgcatcacggtgatgagtcacggccaAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTg                                                                                           >  2:50822‑M2/93‑149 (MQ=255)                                                           GGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGc                                                                                                                                             >  8:199824‑M1/1‑96 (MQ=255)                                                           GGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGc                                                                                                                                             <  7:199824‑M1/96‑1 (MQ=255)                                                            GCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTggg                                                                                         >  6:139497‑M1/1‑147 (MQ=255)                                                            GCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTg                                                                                           >  1:295331‑M1/1‑145 (MQ=255)                                                              CGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCTCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCg                                                                                     >  7:60001‑M1/1‑149 (MQ=255)                                                                tGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTc                                                                                   <  2:126815/149‑1 (MQ=255)                                                                  ccTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCaa                                                                                 <  5:264812/148‑1 (MQ=255)                                                                      atcaCCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCAt                                                                             >  4:134848/1‑149 (MQ=255)                                                                      atcaCCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCAt                                                                             >  7:240484/1‑149 (MQ=255)                                                                           cGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATcag                                                                          >  4:30807/1‑147 (MQ=255)                                                                               aTGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCATCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGt                                                                    <  6:7179/149‑1 (MQ=255)                                                                                  cgcTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTgg                                                                  <  8:275579/148‑1 (MQ=255)                                                                                   gctggctgATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGc                                                                >  6:121855/1‑149 (MQ=255)                                                                                   gctggctgATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGc                                                                >  8:53708/1‑149 (MQ=255)                                                                                       gctgATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCATgt                                                            >  6:188467/1‑148 (MQ=255)                                                                                              gACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGa                                                      <  5:121855/148‑1 (MQ=255)                                                                                                   gACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATc                                                    >  8:191590/1‑145 (MQ=255)                                                                                                   gACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATc                                                    <  7:191590/145‑1 (MQ=255)                                                                                                    aCAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACa                                                <  3:30807/148‑1 (MQ=255)                                                                                                      aaTGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGc                                                                               <  4:249553/115‑1 (MQ=255)                                                                                                      aaTGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGc                                                                               >  3:249553/1‑115 (MQ=255)                                                                                                        tGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTgg                                                            <  3:152330/132‑1 (MQ=255)                                                                                                        tGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTgg                                                            >  4:152330/1‑132 (MQ=255)                                                                                                         gCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCa                                          >  3:47105/1‑149 (MQ=255)                                                                                                             aTGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACtt                                       <  3:134848/148‑1 (MQ=255)                                                                                                                tt‑gtGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCa                                    <  4:47105/148‑1 (MQ=255)                                                                                                                      cTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCAccc                              >  2:233127/1‑149 (MQ=255)                                                                                                                          gcgcatcacggtgatgagtcacggccaAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTg                          <  1:50822‑M2/122‑1 (MQ=255)                                                                                                                           tCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGAACCCTTTGc                         >  3:176614/1‑149 (MQ=255)                                                                                                                              gTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTc                                                                                   >  7:227269/1‑88 (MQ=255)                                                                                                                              gTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTc                                                                                   <  8:227269/88‑1 (MQ=255)                                                                                                                                     gttATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTGATCAGCGGGATGTCGTGGATGCCCTTGCCAGAAGTTGGTTCGTTTAGCATCAGCTGTGTGGGCTTGGCACAGATCGAGATGCCCACTTGCAGTAGCCTTTGCTGTCCGTGc                <  4:176614/146‑1 (MQ=255)                                                                                                                                           gTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGtt         >  1:55415/1‑149 (MQ=255)                                                                                                                                            tCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGTTc        >  6:133836/1‑149 (MQ=255)                                                                                                                                            tCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGTTc        >  4:263400/1‑149 (MQ=255)                                                                                                                                            tCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGTTc        <  8:240484/149‑1 (MQ=255)                                                                                                                                                  ccaAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGTTcgcccgc  <  3:75082‑M2/146‑1 (MQ=255)                                                                                                                                                   caAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGTTcgcccgc  >  8:179705‑M2/3‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCGGTGCGTACGCGCTCGTCGTTGCGCACCTGTTCAGGGGTACCCTCGACCAGGATCTGGCCGTGACTCATCACCGTGATGCGCTGGCTGATCGACATGACAATGCTCATGTT‑GTGCTCGATCAGTAGCACGGTATGGTCGCGGCCAAGGTCGCTGATCAGGTCGGTCATCACCGGGATGTCGTCGATGCCCATGCCCGAAGTGGGTTCGTCAAGCATCAGCAGGGTGGGCTTGGCACAGATCGACATGCCCACTTCCAGCACCCTTTGCTGGCCGTGCGACAGTTCGCCCGC  >  NC_002947/722019‑722311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.