New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 806097	45 (0.920)	3 (0.060)	3/252	NT	6.6%	coding (1233/2832 nt)	PP_0693	hypothetical protein
	?	NC_002947	= 806113	42 (0.890)					coding (1217/2832 nt)	PP_0693	hypothetical protein

CTCGAAGCGTTCGCCCTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGC  >  NC_002947/805950‑806238                                                                                                                                                     |                                                                                                                                              cTCGAAGCGTTCGCCCTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCctgct                                                                                                                                              >  2:2321/1‑149 (MQ=255)  tCGAAGCGTTCGCCCTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCctgctg                                                                                                                                             >  7:111209/1‑149 (MQ=255)     aaGCGTTCGCCGTTGAAGGCGTCGAGCACCGCTTCCAGCGAATTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCTAGCTGATCAGCGCGCCGTTGAACAAACGCATCAGGCGGTGGACGTCCTGCTGCga                                                                                                                                          <  7:188889/149‑1 (MQ=255)       gCGTTCGCCCTTGAAGCCGTCGATCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCgaga                                                                                                                                        <  2:281147/149‑1 (MQ=255)         gTTCGCCCTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAAc                                                                                                                                      <  5:70715/149‑1 (MQ=255)              cccTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTc                                                                                                                                 <  3:80671/149‑1 (MQ=255)              cccTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTc                                                                                                                                 <  3:251952/149‑1 (MQ=255)                cTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTcgc                                                                                                                               <  4:18579/149‑1 (MQ=255)                cTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTcgc                                                                                                                               >  2:156064/1‑149 (MQ=255)                 ttGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATACGAGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGGATAAGGCGGTCGACGTCCTGCTGCGAGAACTCTTcgc                                                                                                                               >  1:246223/1‑149 (MQ=255)                            gAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCa                                                                                                                    <  8:111209/148‑1 (MQ=255)                            gAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCAt                                                                                                                   <  1:2321/149‑1 (MQ=255)                                 ccGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGTATAGCtg                                                                                                              >  6:14425/1‑149 (MQ=255)                                   gCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCtgtt                                                                                                            <  2:1495/149‑1 (MQ=255)                                   gCTTCCAGCGAGTTTACCCAGAGGTCGCGGTCGTCCAGCTCGCTAC‑CGGGATCTCCCAGCGGCAGGCGGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGCCGTCCTGCTGCGAGAACGAGTCGCGCAGGCGGGCATAGCtgtt                                                                                                            >  6:304139/1‑149 (MQ=255)                                         aGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCtgttgttgt                                                                                                       >  2:39589/1‑148 (MQ=255)                                         aGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCtgttgttgt                                                                                                       >  2:44199/1‑148 (MQ=255)                                         aGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTGGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGTCGGGCAAAGCtcttgttgt                                                                                                       >  8:238324/1‑148 (MQ=255)                                          gCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGATCTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCa                                                                                                     <  1:44199/149‑1 (MQ=255)                                          gCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTct                                                                                                     <  1:39589/149‑2 (MQ=255)                                            gATTTTACCCACAGTTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCATGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGc                                                                                                   <  5:304139/149‑1 (MQ=255)                                            gATTTTACCCACAGGTCGCTGTCGGCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACCGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGc                                                                                                   <  4:93315/149‑1 (MQ=255)                                                     cacaGGTCGCTGTCGTCCAGCTAGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAg                                                                                          <  2:259697/149‑1 (MQ=255)                                                      acaGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAgc                                                                                         >  2:276360/1‑149 (MQ=255)                                                              cTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCgcgaagagttctcgcagcagga                                                                                                                         <  7:142601‑M1/109‑23 (MQ=255)                                                              cTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCgcgaagagttctcgcagcagga                                                                                                                         >  8:142601‑M1/1‑87 (MQ=255)                                                                 tcgtcCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGAc                                                                              >  5:304625/1‑149 (MQ=255)                                                                 tcgtcCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGAc                                                                              <  1:276360/149‑1 (MQ=255)                                                                      cAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGTATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGc                                                                          <  5:14425/148‑1 (MQ=255)                                                                            gATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAgg                                                                    <  2:246223/148‑1 (MQ=255)                                                                            gATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAg                                                                     <  5:48342/147‑1 (MQ=255)                                                                            gATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGc                                                                   >  7:214061/1‑149 (MQ=255)                                                                              tAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGt                                                                 >  7:83839/1‑149 (MQ=255)                                                                                  cgcgATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGtttt                                                              >  4:298053/1‑149 (MQ=255)                                                                                  cgcgATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTCGAACAGACGCATCAGGCGGTCGACGTCCTGCgcgaagagttctcgcagcaggacg                                                                                                                       <  6:217470‑M1/92‑25 (MQ=255)                                                                                         tcCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGt                                                       >  4:262367/1‑149 (MQ=255)                                                                                         tcCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGt                                                       >  4:237983/1‑149 (MQ=255)                                                                                                ggCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTAc                                                <  6:304625/149‑1 (MQ=255)                                                                                                         aaCAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCtcgtc                                       <  7:27721/149‑1 (MQ=255)                                                                                                                   cGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCg                             <  3:262367/149‑1 (MQ=255)                                                                                                                    gTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCgg                            >  2:135059/1‑149 (MQ=255)                                                                                                                        aaCAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCAc                         <  3:237983/148‑1 (MQ=255)                                                                                                                        aaCAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACt                        >  7:261357/1‑149 (MQ=255)                                                                                                                             tcGCAGCAGGACGTCGACCGCCTGATGCGAGAACTCTTCGCGCAGGCGGGCATAGCTCTTGTTGTCAGAGTCATCCAGCTGCTGCTTGACCTGCTTCAGGCGTATATCCAGGTCGCGTACTCGCTCGTCGAGGTCTTCTGCACTGAACt                   >  6:220122/2‑149 (MQ=255)                                                                                                                             aCGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCACGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACt                   >  4:222152/1‑149 (MQ=255)                                                                                                                                 aTCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGcc                >  4:100322/1‑148 (MQ=255)                                                                                                                                 aTCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGcc                <  3:100322/148‑1 (MQ=255)                                                                                                                                        ggTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTgg        <  8:83839/149‑1 (MQ=255)                                                                                                                                             aCGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGTACTGCCGTGACTGGGCCAg   <  3:298053/149‑1 (MQ=255)                                                                                                                                             aCGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAg   >  6:232483/1‑149 (MQ=255)                                                                                                                                             aCGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAg   >  8:184902/1‑149 (MQ=255)                                                                                                                                              cGTCCTGCTGCGAGAACTCTTCGCgcaggacgtcgaccgcctgatgcgtctgttcgacggcgcgctgttcagcctgccgctgggagatcgcg                                                           <  6:217470‑M2/92‑69 (MQ=255)                                                                                                                                                tCCTGCTGCGAGAACTCTTCGCgcaggacgtcgaccgcctgatgcgtctgttcaacggcgcgctgttcagcctgccgctgggagatcgcggtatcgagctggacgacag                                        <  7:142601‑M2/109‑88 (MQ=255)                                                                                                                                                tCCTGCTGCGAGAACTCTTCGCgcaggacgtcgaccgcctgatgcgtctgttcaacggcgcgctgttcagcctgccgctgggagatcgcggtatcgagctggacgacag                                        >  8:142601‑M2/1‑22 (MQ=255)                                                                                                                                                  ctgctgCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAgc  <  4:86126/145‑1 (MQ=255)                                                                                                                                                  ctgctgCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAgc  >  3:86126/1‑145 (MQ=255)                                                                                                                                                     |                                                                                                                                              CTCGAAGCGTTCGCCCTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGC  >  NC_002947/805950‑806238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.