New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 806097	45 (0.920)	3 (0.060)	3/252	NT	6.6%	coding (1233/2832 nt)	PP_0693	hypothetical protein
	?	NC_002947	= 806113	42 (0.890)					coding (1217/2832 nt)	PP_0693	hypothetical protein

CTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGCGCGCCGGCCAGCTCGTCGTGG  >  NC_002947/805965‑806259                                                                                                                                                      |                                                                                                                                                   cTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTcgc                                                                                                                                                    <  4:18579/149‑1 (MQ=255) cTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTcgc                                                                                                                                                    >  2:156064/1‑149 (MQ=255)  ttGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATACGAGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGGATAAGGCGGTCGACGTCCTGCTGCGAGAACTCTTcgc                                                                                                                                                    >  1:246223/1‑149 (MQ=255)             gAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCa                                                                                                                                         <  8:111209/148‑1 (MQ=255)             gAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCAt                                                                                                                                        <  1:2321/149‑1 (MQ=255)                  ccGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGTATAGCtg                                                                                                                                   >  6:14425/1‑149 (MQ=255)                    gCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCtgtt                                                                                                                                 <  2:1495/149‑1 (MQ=255)                    gCTTCCAGCGAGTTTACCCAGAGGTCGCGGTCGTCCAGCTCGCTAC‑CGGGATCTCCCAGCGGCAGGCGGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGCCGTCCTGCTGCGAGAACGAGTCGCGCAGGCGGGCATAGCtgtt                                                                                                                                 >  6:304139/1‑149 (MQ=255)                          aGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCtgttgttgt                                                                                                                            >  2:39589/1‑148 (MQ=255)                          aGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCtgttgttgt                                                                                                                            >  2:44199/1‑148 (MQ=255)                          aGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTGGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGTCGGGCAAAGCtcttgttgt                                                                                                                            >  8:238324/1‑148 (MQ=255)                           gCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGATCTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCa                                                                                                                          <  1:44199/149‑1 (MQ=255)                           gCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTct                                                                                                                          <  1:39589/149‑2 (MQ=255)                             gATTTTACCCACAGTTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCATGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGc                                                                                                                        <  5:304139/149‑1 (MQ=255)                             gATTTTACCCACAGGTCGCTGTCGGCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACCGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGc                                                                                                                        <  4:93315/149‑1 (MQ=255)                                      cacaGGTCGCTGTCGTCCAGCTAGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAg                                                                                                               <  2:259697/149‑1 (MQ=255)                                       acaGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAgc                                                                                                              >  2:276360/1‑149 (MQ=255)                                                  tcgtcCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGAc                                                                                                   >  5:304625/1‑149 (MQ=255)                                                  tcgtcCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGAc                                                                                                   <  1:276360/149‑1 (MQ=255)                                                       cAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGTATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGc                                                                                               <  5:14425/148‑1 (MQ=255)                                                             gATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAgg                                                                                         <  2:246223/148‑1 (MQ=255)                                                             gATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAg                                                                                          <  5:48342/147‑1 (MQ=255)                                                             gATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGc                                                                                        >  7:214061/1‑149 (MQ=255)                                                               tAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGt                                                                                      >  7:83839/1‑149 (MQ=255)                                                                   cgcgATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGtttt                                                                                   >  4:298053/1‑149 (MQ=255)                                                                          tcCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGt                                                                            >  4:262367/1‑149 (MQ=255)                                                                          tcCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGt                                                                            >  4:237983/1‑149 (MQ=255)                                                                                 ggCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTAc                                                                     <  6:304625/149‑1 (MQ=255)                                                                                          aaCAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCtcgtc                                                            <  7:27721/149‑1 (MQ=255)                                                                                                    cGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCg                                                  <  3:262367/149‑1 (MQ=255)                                                                                                     gTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCgg                                                 >  2:135059/1‑149 (MQ=255)                                                                                                         aaCAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCAc                                              <  3:237983/148‑1 (MQ=255)                                                                                                         aaCAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACt                                             >  7:261357/1‑149 (MQ=255)                                                                                                              tcGCAGCAGGACGTCGACCGCCTGATGCGAGAACTCTTCGCGCAGGCGGGCATAGCTCTTGTTGTCAGAGTCATCCAGCTGCTGCTTGACCTGCTTCAGGCGTATATCCAGGTCGCGTACTCGCTCGTCGAGGTCTTCTGCACTGAACt                                        >  6:220122/2‑149 (MQ=255)                                                                                                              aCGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCACGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACt                                        >  4:222152/1‑149 (MQ=255)                                                                                                                  aTCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGcc                                     >  4:100322/1‑148 (MQ=255)                                                                                                                  aTCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGcc                                     <  3:100322/148‑1 (MQ=255)                                                                                                                         ggTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTgg                             <  8:83839/149‑1 (MQ=255)                                                                                                                              aCGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGTACTGCCGTGACTGGGCCAg                        <  3:298053/149‑1 (MQ=255)                                                                                                                              aCGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAg                        >  6:232483/1‑149 (MQ=255)                                                                                                                              aCGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAg                        >  8:184902/1‑149 (MQ=255)                                                                                                                               cGTCCTGCTGCGAGAACTCTTCGCgcaggacgtcgaccgcctgatgcgtctgttcgacggcgcgctgttcagcctgccgctgggagatcgcg                                                                                <  6:217470‑M2/92‑69 (MQ=255)                                                                                                                                 tCCTGCTGCGAGAACTCTTCGCgcaggacgtcgaccgcctgatgcgtctgttcaacggcgcgctgttcagcctgccgctgggagatcgcggtatcgagctggacgacag                                                             <  7:142601‑M2/109‑88 (MQ=255)                                                                                                                                 tCCTGCTGCGAGAACTCTTCGCgcaggacgtcgaccgcctgatgcgtctgttcaacggcgcgctgttcagcctgccgctgggagatcgcggtatcgagctggacgacag                                                             >  8:142601‑M2/1‑22 (MQ=255)                                                                                                                                   ctgctgCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAgc                       >  3:86126/1‑145 (MQ=255)                                                                                                                                   ctgctgCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAgc                       <  4:86126/145‑1 (MQ=255)                                                                                                                                      cggcGACAACCCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCACCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGCGCGCCg                 <  8:214061/146‑1 (MQ=255)                                                                                                                                         cGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGCGCGCCGGc               >  4:278900/1‑147 (MQ=255)                                                                                                                                                  ttCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGATGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGCGCGCCGGCCAGCTcgtcgt    >  1:58017/1‑149 (MQ=255)                                                                                                                                                     gcgcAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGCGCGCCGGCCAGCTCGTCGTgg  <  8:261357/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CTTGAAGCCGTCGAGCACCGCTTCCAGCGATTTTACCCACAGGTCGCTGTCGTCCAGCTCGATAC‑CGCGATCTCCCAGCGGCAGGCTGAACAGCGCGCCGTTGAACAGACGCATCAGGCGGTCGACGTCCTGCTGCGAGAACTCTTCGCGCAGGCGGGCATAGCTGTTGTTGTCAGCGTGATCCAGCTGCTGCTTGACCTGCTTCAGGCGTTTTTCCAGGTCGCGTACGCGCTCGTCGAGGTCTTCGGCACTGAACTGCCGTGACTGGGCCAGCGCGCCGGCCAGCTCGTCGTGG  >  NC_002947/805965‑806259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.