New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 896940	39 (0.800)	4 (0.090)	4/248	NT	9.7%	coding (372/1341 nt)	PP_0779	methyl‑accepting chemotaxis transducer/sensory box protein
	?	NC_002947	= 896963	38 (0.820)					coding (395/1341 nt)	PP_0779	methyl‑accepting chemotaxis transducer/sensory box protein

ATCGTCCCCGCCCACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTC  >  NC_002947/896794‑897087                                                                                                                                                   |                                                                                                                                                    aTCGTCCCCGCCCACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTgaagaa                                                                                                                                                   >  2:60694/1‑149 (MQ=255) aTCGTCCCCGCCCACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTgaagaa                                                                                                                                                   <  6:282002/149‑1 (MQ=255)     tCCCCGCCCACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGc                                                                                                                                               <  2:258291/149‑1 (MQ=255)        ccGCCCACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAg                                                                                                                                            <  4:151235/149‑1 (MQ=255)         cGCCCACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCATCCGGTGAAGAACAGCGAgg                                                                                                                                           >  2:39141/1‑149 (MQ=255)            ccACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGgc                                                                                                                                        >  1:109106/1‑149 (MQ=255)                gTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACa                                                                                                                                                 >  1:228748/1‑136 (MQ=255)                gTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACa                                                                                                                                                 <  2:228748/136‑1 (MQ=255)                 tAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAgggg                                                                                                                                         >  1:50530/1‑143 (MQ=255)                 tAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAgggg                                                                                                                                         <  2:50530/143‑1 (MQ=255)                 tAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATc                                                                                                                                   <  1:112609/149‑1 (MQ=255)                        gCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTAct                                                                                                                            <  6:135825‑M2/149‑3 (MQ=255)                             aCTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGtacttgatgcgcccctcgctgttcttcacc                                                                                                                       <  6:72588‑M1/149‑31 (MQ=255)                             aCTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTActtcacc                                                                                                                       >  3:294211‑M2/1‑142 (MQ=255)                                    ccAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGc                                                                                                                   <  4:25377/146‑1 (MQ=255)                                     cAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGtacttgatgcgcccctcgctgttcttcaccggctgcag                                                                                                               <  7:85176‑M1/149‑39 (MQ=255)                                           aTGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGa                                                                                                         >  2:177091/1‑149 (MQ=255)                                               aaaGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCt                                                                                                      <  1:60694/148‑1 (MQ=255)                                                     cGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGa                                                                                               <  6:287851/149‑1 (MQ=255)                                                      gATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGAGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGaa                                                                                              >  8:73256/1‑149 (MQ=255)                                                       aTCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAAc                                                                                             >  2:281422/1‑149 (MQ=255)                                                        tCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGtacttgatgcgcccctcgctgttcttcac                                                                                                                        <  7:14985‑M1/121‑30 (MQ=255)                                                        tCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGtacttgatgcgcccctcgctgttcttcac                                                                                                                        >  8:14985‑M1/1‑92 (MQ=255)                                                           gCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATc                                                                                         <  4:130964/149‑1 (MQ=255)                                                            ccGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCaa                                                                                                                                 <  5:188916/108‑1 (MQ=255)                                                             cGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCga                                                                                       <  1:177091/149‑1 (MQ=255)                                                                    aaCACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCa                                                                                >  2:293686/1‑149 (MQ=255)                                                                    aaCACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCa                                                                                <  1:281422/149‑1 (MQ=255)                                                                     acacCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCAc                                                                               <  5:135825/149‑1 (MQ=255)                                                                           gAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCAcgc                                                                             <  8:212396/145‑1 (MQ=255)                                                                           gAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCAcgc                                                                             >  7:212396/1‑145 (MQ=255)                                                                                     ttCCGTCTCCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCt                                                               <  7:237671/149‑1 (MQ=255)                                                                                          tcttctGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATc                                                           >  8:152378/1‑148 (MQ=255)                                                                                                 cGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGc                                                      <  7:152378/146‑1 (MQ=255)                                                                                                          ggTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTc                                          >  7:135991/1‑149 (MQ=255)                                                                                                                gAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTTACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGc                                    >  1:229013/1‑149 (MQ=255)                                                                                                                 aaGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCg                                   <  2:109106/149‑1 (MQ=255)                                                                                                                   gCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGt                                 >  6:130680/1‑149 (MQ=255)                                                                                                                     cTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGa                               <  3:30800/149‑1 (MQ=255)                                                                                                                     cTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGAAGCGCTCGACTGCGGTg                                >  3:261767/1‑148 (MQ=255)                                                                                                                       ggCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATc                             <  5:130680/149‑1 (MQ=255)                                                                                                                                 gATCCTGCACCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGAc                    <  1:39141/148‑1 (MQ=255)                                                                                                                                   tCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTc                 >  3:17720/1‑149 (MQ=255)                                                                                                                                     cTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctgatcgcacttttcatgcgctg               <  7:85176‑M2/149‑112 (MQ=255)                                                                                                                                     cTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGa                           <  6:45940/137‑1 (MQ=255)                                                                                                                                     cTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGa                           >  5:45940/1‑137 (MQ=255)                                                                                                                                      tGCAGCCTGTGAAGAACAGCGATGGGCGCATCAAGTACTTAACCCTGAATTAAATATTCCTCACGCGAACAATCTATACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATgcgc                                            <  6:261630/119‑1 (MQ=255)                                                                                                                                         aGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACgg            >  7:230223/1‑148 (MQ=255)                                                                                                                                             ggTGAAGtacttgatgcgcccctcgctgttcttcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctgatcgcacttttcatgcgctggtagaagt       >  3:294211‑M1/1‑7 (MQ=255)                                                                                                                                             ggTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctgatcgcacttttcatgcgctggtagaagt       <  6:72588‑M2/149‑120 (MQ=255)                                                                                                                                             ggTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGcatca       >  5:153433/1‑149 (MQ=255)                                                                                                                                              gTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctga                                  <  7:14985‑M2/121‑93 (MQ=255)                                                                                                                                              gTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctga                                  >  8:14985‑M2/1‑29 (MQ=255)                                                                                                                                              gTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGcatcat      >  3:176516/1‑149 (MQ=255)                                                                                                                                                  aGtacttgatgcgcccctcgctgttcttcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctgatcgcacttttcatgcgctggtagaagtccagc  <  6:135825‑M1/149‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ATCGTCCCCGCCCACGTAAAGTCGCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTC  >  NC_002947/896794‑897087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.