New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 896940	39 (0.800)	4 (0.090)	4/248	NT	9.7%	coding (372/1341 nt)	PP_0779	methyl‑accepting chemotaxis transducer/sensory box protein
	?	NC_002947	= 896963	38 (0.820)					coding (395/1341 nt)	PP_0779	methyl‑accepting chemotaxis transducer/sensory box protein

GCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGATCGTTTCC  >  NC_002947/896817‑897106                                                                                                                                                   |                                                                                                                                                gCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTAct                                                                                                                                               <  6:135825‑M2/149‑3 (MQ=255)      aCTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTActtcacc                                                                                                                                          >  3:294211‑M2/1‑142 (MQ=255)             ccAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGc                                                                                                                                      <  4:25377/146‑1 (MQ=255)                    aTGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGa                                                                                                                            >  2:177091/1‑149 (MQ=255)                        aaaGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCt                                                                                                                         <  1:60694/148‑1 (MQ=255)                              cGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGa                                                                                                                  <  6:287851/149‑1 (MQ=255)                               gATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGAGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGaa                                                                                                                 >  8:73256/1‑149 (MQ=255)                                aTCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAAc                                                                                                                >  2:281422/1‑149 (MQ=255)                                    gCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATc                                                                                                            <  4:130964/149‑1 (MQ=255)                                      cGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCga                                                                                                          <  1:177091/149‑1 (MQ=255)                                             aaCACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCa                                                                                                   >  2:293686/1‑149 (MQ=255)                                             aaCACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCa                                                                                                   <  1:281422/149‑1 (MQ=255)                                              acacCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCAc                                                                                                  <  5:135825/149‑1 (MQ=255)                                                    gAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCAcgc                                                                                                >  7:212396/1‑145 (MQ=255)                                                    gAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCAcgc                                                                                                <  8:212396/145‑1 (MQ=255)                                                              ttCCGTCTCCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCt                                                                                  <  7:237671/149‑1 (MQ=255)                                                                   tcttctGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATc                                                                              >  8:152378/1‑148 (MQ=255)                                                                          cGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGc                                                                         <  7:152378/146‑1 (MQ=255)                                                                                   ggTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTc                                                             >  7:135991/1‑149 (MQ=255)                                                                                         gAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTTACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGc                                                       >  1:229013/1‑149 (MQ=255)                                                                                          aaGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCg                                                      <  2:109106/149‑1 (MQ=255)                                                                                            gCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGt                                                    >  6:130680/1‑149 (MQ=255)                                                                                              cTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGa                                                  <  3:30800/149‑1 (MQ=255)                                                                                              cTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGAAGCGCTCGACTGCGGTg                                                   >  3:261767/1‑148 (MQ=255)                                                                                                ggCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATc                                                <  5:130680/149‑1 (MQ=255)                                                                                                          gATCCTGCACCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGAc                                       <  1:39141/148‑1 (MQ=255)                                                                                                            tCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTc                                    >  3:17720/1‑149 (MQ=255)                                                                                                              cTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctgatcgcacttttcatgcgctg                                  <  7:85176‑M2/149‑112 (MQ=255)                                                                                                              cTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGa                                              <  6:45940/137‑1 (MQ=255)                                                                                                              cTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGa                                              >  5:45940/1‑137 (MQ=255)                                                                                                               tGCAGCCTGTGAAGAACAGCGATGGGCGCATCAAGTACTTAACCCTGAATTAAATATTCCTCACGCGAACAATCTATACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATgcgc                                                               <  6:261630/119‑1 (MQ=255)                                                                                                                  aGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACgg                               >  7:230223/1‑148 (MQ=255)                                                                                                                      ggTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctgatcgcacttttcatgcgctggtagaagt                          <  6:72588‑M2/149‑120 (MQ=255)                                                                                                                      ggTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGcatca                          >  5:153433/1‑149 (MQ=255)                                                                                                                       gTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctga                                                     <  7:14985‑M2/121‑93 (MQ=255)                                                                                                                       gTGAAGAACAGCGAGGGGCGCATCAAGTActtcaccggctgcaggatcgagcgcagccaggcttcctgaccattgccccgcagaagacggaacgcaccgttcaggtgttcaccacggctga                                                     >  8:14985‑M2/1‑29 (MQ=255)                                                                                                                       gTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGcatcat                         >  3:176516/1‑149 (MQ=255)                                                                                                                              aCAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACt                  <  6:153433/149‑1 (MQ=255)                                                                                                                               cAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTTACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTg                 <  2:229013/149‑1 (MQ=255)                                                                                                                                       ggCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGAt         <  8:135991/149‑1 (MQ=255)                                                                                                                                        gcgcATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGATc        >  3:212476/1‑149 (MQ=255)                                                                                                                                         cgcATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGATCg       >  8:15538/1‑149 (MQ=255)                                                                                                                                         cgcATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGAGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGATCg       >  7:130408/1‑149 (MQ=255)                                                                                                                                             tCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGATCGTTTc   <  1:293686/149‑1 (MQ=255)                                                                                                                                              cAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGATCGTTTcc  >  2:7122/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                GCTGGACTTCTACCAGCGCATGAAAAGTGCGATCAGCCGTGGTGAACACCTGAACGGTGCGTTCCGTCTTCTGCGGGGCAATGGTCAGGAAGCCTGGCTGCGCTCGATCCTGCAGCCGGTGAAGAACAGCGAGGGGCGCATCAAGTACTTCACCCTGCATTCCAGCGACCTCACGCGAACCATCGAGACCTCACGCGAGCACGAAAGCCTGATCAAGGCCCTGATGCGCTCGACTGCGGTGATCGAGTTCGACCTCGACGGCATCATTCTCACTGCCAACGATCGTTTCC  >  NC_002947/896817‑897106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.