New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 924621	46 (0.940)	3 (0.060)	3/252	NT	6.0%	coding (572/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 924633	50 (1.060)					coding (560/2169 nt)	PP_0804	protein secretion ABC transporter permease/ATP‑binding protein

GTCACCTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCG  >  NC_002947/924480‑924766                                                                                                                                               |                                                                                                                                                  gtcACCTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCAGACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATACGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGgccagcgc                                                                                                                                               >  1:226963/1‑147 (MQ=255) gtcACCTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGgccagcgccag                                                                                                                                            >  8:205887/1‑149 (MQ=255)      cTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGt                                                                                                                                       >  1:200473/1‑149 (MQ=255)      cTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGt                                                                                                                                       >  4:149775/1‑149 (MQ=255)            ccGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGcca                                                                                                                                 >  7:35195/1‑149 (MQ=255)            ccGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCA                                                                                                                                                   >  2:100667‑M1/1‑131 (MQ=255)            ccGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCA                                                                                                                                                   <  1:100667‑M1/131‑1 (MQ=255)                   agGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGa                                                                                                                          <  5:50147/149‑1 (MQ=255)                     gcgcATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTCGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAg                                                                                                                        <  7:205887/149‑1 (MQ=255)                        cATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGa                                                                                                                     <  2:55354/149‑1 (MQ=255)                         aTGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGat                                                                                                                    <  7:177420/149‑1 (MQ=255)                            cTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGGCGTACACCTGCATCGAGAACAGCACGCCGGCCAACGTGCTGGCGCtggccggcgtgctgttctcga                                                                                                                  >  8:180536‑M2/1‑127 (MQ=255)                              gAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGAtcatca                                                                                                               >  8:235748/1‑149 (MQ=255)                                    gAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGGACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGcc                                                                                                         >  4:114518/1‑149 (MQ=255)                                    gAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCG‑CAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGcc                                                                                                         >  4:18037/1‑148 (MQ=255)                                        acCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCG‑CAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATaa                                                                                                    <  3:18037/149‑1 (MQ=255)                                           aGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAgg                                                                                                  <  2:200473/149‑1 (MQ=255)                                            gTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAggg                                                                                                 <  7:235748/149‑1 (MQ=255)                                               ccA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGgcg                                                                                               >  6:171810/1‑148 (MQ=255)                                                   acaccacaccGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAg                                                                                           >  3:57441/1‑149 (MQ=255)                                                          accGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACg                                                                                      >  1:98343/1‑147 (MQ=255)                                                            cGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAg                                                                                   >  4:210588/1‑148 (MQ=255)                                                                     ggACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCgg                                                                         <  5:171810/149‑1 (MQ=255)                                                                          tAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGaa                                                                    <  3:210588/149‑1 (MQ=255)                                                                                gTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGt                                                               <  4:57441/148‑1 (MQ=255)                                                                                   ggTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGGACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGc                                                            <  3:114518/148‑1 (MQ=255)                                                                                    gTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCCCGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGAGGCGGGCGAACCCGTGGCgg                                                          >  8:129251/1‑149 (MQ=255)                                                                                    gTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCGATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCgg                                                          >  8:133286/1‑149 (MQ=255)                                                                                     tAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGt                                                         >  4:113793/1‑149 (MQ=255)                                                                                       gggATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTc                                                        <  3:149775/148‑1 (MQ=255)                                                                                          aTTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAacgtgctggcgctggccggcgtgct                                                                                                                          <  7:79974‑M1/79‑26 (MQ=255)                                                                                          aTTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAacgtgctggcgctggccggcgtgct                                                                                                                          >  8:79974‑M1/1‑54 (MQ=255)                                                                                                 cGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCgg                                             <  8:35195/149‑1 (MQ=255)                                                                                                    tATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGgtgt                                          <  3:113793/149‑1 (MQ=255)                                                                                                     aTCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGgtg                                           >  4:155261/1‑147 (MQ=255)                                                                                                            ggTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGtcgtcg                                  <  4:116122/149‑1 (MQ=255)                                                                                                                     ccTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAgtcgt                                    <  2:268346/138‑1 (MQ=255)                                                                                                                     ccTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAgtcgt                                    >  1:268346/1‑138 (MQ=255)                                                                                                                      cTGCATCTAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACAt                        >  7:260035/1‑149 (MQ=255)                                                                                                                      cTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGcaca                         >  8:188510/1‑148 (MQ=255)                                                                                                                      cTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGcaca                         >  4:941/1‑148 (MQ=255)                                                                                                                           tCGAGAACAGCACGCCGGCCAgcgccagcacgttggccggcgtgctgttctcgatgcaggtgtacgcccgagtgataccggccgaatccctacccactctctacgtcctgtttggcggtgtggtgttggcactggtgttcgacttcag                    >  8:180536‑M1/1‑21 (MQ=255)                                                                                                                            cGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAAc                                                                   <  3:277822/100‑1 (MQ=255)                                                                                                                            cGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAAc                                                                   >  4:277822/1‑100 (MQ=255)                                                                                                                             gagaACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAg                 >  7:22510/1‑149 (MQ=255)                                                                                                                             gagaACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAg                 >  3:124398/1‑149 (MQ=255)                                                                                                                              agaACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGt                >  5:233703/1‑149 (MQ=255)                                                                                                                                 aCAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTggc             >  5:37966/1‑149 (MQ=255)                                                                                                                                  cAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTggcc            >  1:284605/1‑149 (MQ=255)                                                                                                                                   aGCACGCCGGCCAGCGCCAGCACGTtggccggcgtgctgttctcgatgcaggtgtacgaccgagtgataccggccgaat                                                                                 >  8:79974‑M2/1‑25 (MQ=255)                                                                                                                                   aGCACGCCGGCCAGCGCCAGCACGTtggccggcgtgctgttctcgatgcaggtgtacgaccgagtgataccggccgaat                                                                                 <  7:79974‑M2/79‑55 (MQ=255)                                                                                                                                     cACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATcgcg                    <  2:250606/138‑1 (MQ=255)                                                                                                                                     cACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATcgcg                    >  1:250606/1‑138 (MQ=255)                                                                                                                                      aCGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTggccgggc        <  3:941/149‑1 (MQ=255)                                                                                                                                       tggtggCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCTCGGTGTAGGCGTCGGTGCGCACATCGCGCAGTggccgggcc       >  4:166160/5‑149 (MQ=255)                                                                                                                                         ccGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGgccgggccgg     <  2:226963/149‑1 (MQ=255)                                                                                                                                           ggCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAg                                        >  7:7728/1‑112 (MQ=255)                                                                                                                                           ggCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAg                                        <  8:7728/112‑1 (MQ=255)                                                                                                                                            gccagcgccagcACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGgcg  <  2:284605/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                  GTCACCTTTAGCCGCAGCAGGCGCATGCTGAAGTCGAACACCAGTGCCA‑ACACCACACCGCCAAACAGGACGTAGAGAGTGGGTAGGGATTCGGCCGGTATCACTCGGTCGTACACCTGCATCGAGAACAGCACGCCGGCCAGCGCCAGCACGTTGGCCACCAGTGAAGCGATCATCACCTGCCCATAAGGGCGCAAGTCACGCAGTACGATGCGGGCGAACCAGTGGCGGTCGTAAGGCGCGGTGTAGTCGTCGGTGCGCACATCGCGCAGTGGCCGGGCCGGGCG  >  NC_002947/924480‑924766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.